Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tagH and LU632_RS03845 overlap by 1 nucleotides LU632_RS03845 and LU632_RS03850 are separated by 18 nucleotides
LU632_RS03840: tagH - type VI secretion system-associated FHA domain protein TagH, at 764,709 to 766,553
tagH
LU632_RS03845: LU632_RS03845 - protein phosphatase 2C domain-containing protein, at 766,553 to 767,347
_RS03845
LU632_RS03850: LU632_RS03850 - hypothetical protein, at 767,366 to 768,418
_RS03850
Position (kb) 766
767
768 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 765.588 kb on + strand, within tagH at 765.589 kb on - strand, within tagH at 765.620 kb on + strand, within tagH at 765.620 kb on + strand, within tagH at 765.620 kb on + strand, within tagH at 765.621 kb on - strand, within tagH at 765.812 kb on + strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 765.813 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.050 kb on - strand, within tagH at 766.238 kb on - strand, within tagH at 766.339 kb on + strand, within tagH at 766.500 kb on + strand at 766.558 kb on + strand at 766.559 kb on - strand at 766.601 kb on - strand at 766.871 kb on + strand, within LU632_RS03845 at 766.913 kb on + strand, within LU632_RS03845 at 766.932 kb on - strand, within LU632_RS03845 at 767.021 kb on + strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.147 kb on - strand, within LU632_RS03845 at 767.165 kb on - strand, within LU632_RS03845 at 767.171 kb on - strand, within LU632_RS03845 at 767.253 kb on - strand, within LU632_RS03845 at 767.365 kb on + strand at 767.365 kb on + strand at 767.372 kb on + strand at 767.372 kb on + strand at 767.401 kb on + strand at 767.402 kb on - strand at 767.612 kb on - strand, within LU632_RS03850 at 767.929 kb on + strand, within LU632_RS03850 at 767.979 kb on - strand, within LU632_RS03850 at 767.979 kb on - strand, within LU632_RS03850 at 768.046 kb on + strand, within LU632_RS03850 at 768.046 kb on + strand, within LU632_RS03850 at 768.047 kb on - strand, within LU632_RS03850 at 768.047 kb on - strand, within LU632_RS03850 at 768.246 kb on + strand, within LU632_RS03850 at 768.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 765,588 + tagH LU632_RS03840 0.48 -2.3 765,589 - tagH LU632_RS03840 0.48 -0.5 765,620 + tagH LU632_RS03840 0.49 -0.5 765,620 + tagH LU632_RS03840 0.49 +1.0 765,620 + tagH LU632_RS03840 0.49 +1.1 765,621 - tagH LU632_RS03840 0.49 -0.1 765,812 + tagH LU632_RS03840 0.60 +1.0 765,813 - tagH LU632_RS03840 0.60 -1.1 765,813 - tagH LU632_RS03840 0.60 -0.4 765,813 - tagH LU632_RS03840 0.60 +1.5 765,813 - tagH LU632_RS03840 0.60 +0.7 765,813 - tagH LU632_RS03840 0.60 -0.8 766,050 - tagH LU632_RS03840 0.73 -1.0 766,050 - tagH LU632_RS03840 0.73 +0.0 766,050 - tagH LU632_RS03840 0.73 -1.6 766,238 - tagH LU632_RS03840 0.83 +1.1 766,339 + tagH LU632_RS03840 0.88 -0.4 766,500 + -1.2 766,558 + -2.1 766,559 - +0.3 766,601 - +0.9 766,871 + LU632_RS03845 0.40 +0.2 766,913 + LU632_RS03845 0.45 -1.7 766,932 - LU632_RS03845 0.48 -1.8 767,021 + LU632_RS03845 0.59 +1.8 767,147 - LU632_RS03845 0.75 -0.3 767,147 - LU632_RS03845 0.75 -0.2 767,147 - LU632_RS03845 0.75 -0.5 767,165 - LU632_RS03845 0.77 -2.4 767,171 - LU632_RS03845 0.78 -0.5 767,253 - LU632_RS03845 0.88 -1.5 767,365 + +1.8 767,365 + +0.5 767,372 + +1.6 767,372 + -0.6 767,401 + +1.1 767,402 - +0.1 767,612 - LU632_RS03850 0.23 +2.6 767,929 + LU632_RS03850 0.53 +1.3 767,979 - LU632_RS03850 0.58 +1.0 767,979 - LU632_RS03850 0.58 +0.2 768,046 + LU632_RS03850 0.65 +4.3 768,046 + LU632_RS03850 0.65 +0.5 768,047 - LU632_RS03850 0.65 +0.3 768,047 - LU632_RS03850 0.65 -0.2 768,246 + LU632_RS03850 0.84 -0.9 768,321 - +3.2
Or see this region's nucleotide sequence