Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03725 and LU632_RS03730 are separated by 81 nucleotides LU632_RS03730 and LU632_RS03735 are separated by 87 nucleotides LU632_RS03735 and LU632_RS03740 are separated by 88 nucleotides LU632_RS03740 and LU632_RS03745 are separated by 289 nucleotides
LU632_RS03725: LU632_RS03725 - IS1 family transposase, at 744,064 to 744,761
_RS03725
LU632_RS03730: LU632_RS03730 - GGDEF domain-containing protein, at 744,843 to 745,096
_RS03730
LU632_RS03735: LU632_RS03735 - DUF1435 domain-containing protein, at 745,184 to 745,459
_RS03735
LU632_RS03740: LU632_RS03740 - tRNA-Leu, at 745,548 to 745,634
_RS03740
LU632_RS03745: LU632_RS03745 - hypothetical protein, at 745,924 to 746,439
_RS03745
Position (kb) 745
746 Strain fitness (log2 ratio) -2
-1
0
1
2 at 744.786 kb on + strand at 744.901 kb on - strand, within LU632_RS03730 at 744.969 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.062 kb on - strand, within LU632_RS03730 at 745.127 kb on - strand at 745.134 kb on + strand at 745.140 kb on - strand at 745.161 kb on + strand at 745.165 kb on + strand at 745.166 kb on - strand at 745.178 kb on + strand at 745.178 kb on + strand at 745.179 kb on - strand at 745.239 kb on + strand, within LU632_RS03735 at 745.239 kb on + strand, within LU632_RS03735 at 745.239 kb on + strand, within LU632_RS03735 at 745.260 kb on + strand, within LU632_RS03735 at 745.646 kb on - strand at 745.658 kb on + strand at 745.658 kb on + strand at 745.711 kb on - strand at 745.731 kb on + strand at 746.090 kb on - strand, within LU632_RS03745 at 746.159 kb on + strand, within LU632_RS03745 at 746.393 kb on + strand at 746.394 kb on - strand at 746.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 744,786 + +1.8 744,901 - LU632_RS03730 0.23 -1.5 744,969 - LU632_RS03730 0.50 -1.4 745,062 - LU632_RS03730 0.86 +0.3 745,062 - LU632_RS03730 0.86 -2.3 745,062 - LU632_RS03730 0.86 +0.2 745,127 - -0.7 745,134 + +2.0 745,140 - -2.1 745,161 + -0.7 745,165 + -0.9 745,166 - +1.0 745,178 + -0.1 745,178 + +0.9 745,179 - +0.1 745,239 + LU632_RS03735 0.20 -0.7 745,239 + LU632_RS03735 0.20 -1.0 745,239 + LU632_RS03735 0.20 -1.9 745,260 + LU632_RS03735 0.28 -2.2 745,646 - -0.0 745,658 + -2.4 745,658 + -0.7 745,711 - -1.0 745,731 + -1.8 746,090 - LU632_RS03745 0.32 +0.7 746,159 + LU632_RS03745 0.46 +1.3 746,393 + -2.1 746,394 - +1.4 746,449 - -0.9
Or see this region's nucleotide sequence