Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03515 and LU632_RS03520 are separated by 1 nucleotides LU632_RS03520 and LU632_RS03525 overlap by 4 nucleotides LU632_RS03525 and LU632_RS03530 overlap by 8 nucleotides LU632_RS03530 and LU632_RS03535 are separated by 118 nucleotides LU632_RS03535 and LU632_RS03540 are separated by 81 nucleotides
LU632_RS03515: LU632_RS03515 - TraR/DksA family transcriptional regulator, at 712,792 to 713,013
_RS03515
LU632_RS03520: LU632_RS03520 - 3'-5' exonuclease, at 713,015 to 713,722
_RS03520
LU632_RS03525: LU632_RS03525 - DUF5405 family protein, at 713,719 to 714,000
_RS03525
LU632_RS03530: LU632_RS03530 - replication endonuclease, at 713,993 to 716,218
_RS03530
LU632_RS03535: LU632_RS03535 - DinI family protein, at 716,337 to 716,777
_RS03535
LU632_RS03540: LU632_RS03540 - hypothetical protein, at 716,859 to 717,590
_RS03540
Position (kb) 713
714
715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 713.053 kb on - strand at 713.198 kb on - strand, within LU632_RS03520 at 713.291 kb on - strand, within LU632_RS03520 at 713.311 kb on + strand, within LU632_RS03520 at 713.326 kb on + strand, within LU632_RS03520 at 713.404 kb on - strand, within LU632_RS03520 at 713.404 kb on - strand, within LU632_RS03520 at 713.422 kb on - strand, within LU632_RS03520 at 713.422 kb on - strand, within LU632_RS03520 at 713.424 kb on + strand, within LU632_RS03520 at 713.445 kb on - strand, within LU632_RS03520 at 713.445 kb on - strand, within LU632_RS03520 at 713.507 kb on + strand, within LU632_RS03520 at 713.531 kb on - strand, within LU632_RS03520 at 713.541 kb on - strand, within LU632_RS03520 at 713.550 kb on - strand, within LU632_RS03520 at 713.550 kb on - strand, within LU632_RS03520 at 713.611 kb on + strand, within LU632_RS03520 at 713.735 kb on + strand at 713.736 kb on - strand at 713.736 kb on - strand at 713.738 kb on + strand at 713.739 kb on - strand at 713.885 kb on + strand, within LU632_RS03525 at 713.886 kb on - strand, within LU632_RS03525 at 713.914 kb on - strand, within LU632_RS03525 at 713.960 kb on + strand, within LU632_RS03525 at 713.961 kb on - strand, within LU632_RS03525 at 713.961 kb on - strand, within LU632_RS03525 at 713.961 kb on - strand, within LU632_RS03525 at 713.998 kb on + strand at 713.998 kb on + strand at 713.998 kb on + strand at 713.998 kb on + strand at 714.014 kb on + strand at 714.014 kb on + strand at 714.014 kb on + strand at 714.015 kb on - strand at 714.015 kb on - strand at 714.015 kb on - strand at 714.059 kb on + strand at 714.060 kb on - strand at 714.068 kb on + strand at 714.069 kb on - strand at 714.095 kb on - strand at 714.095 kb on - strand at 714.303 kb on + strand, within LU632_RS03530 at 714.303 kb on + strand, within LU632_RS03530 at 714.344 kb on - strand, within LU632_RS03530 at 714.344 kb on - strand, within LU632_RS03530 at 714.350 kb on + strand, within LU632_RS03530 at 714.351 kb on - strand, within LU632_RS03530 at 714.351 kb on - strand, within LU632_RS03530 at 714.374 kb on - strand, within LU632_RS03530 at 714.387 kb on - strand, within LU632_RS03530 at 714.388 kb on + strand, within LU632_RS03530 at 714.403 kb on + strand, within LU632_RS03530 at 714.403 kb on + strand, within LU632_RS03530 at 714.404 kb on - strand, within LU632_RS03530 at 714.440 kb on - strand, within LU632_RS03530 at 714.490 kb on + strand, within LU632_RS03530 at 714.518 kb on + strand, within LU632_RS03530 at 714.519 kb on - strand, within LU632_RS03530 at 714.519 kb on - strand, within LU632_RS03530 at 714.590 kb on + strand, within LU632_RS03530 at 714.620 kb on - strand, within LU632_RS03530 at 714.851 kb on + strand, within LU632_RS03530 at 714.852 kb on + strand, within LU632_RS03530 at 714.879 kb on + strand, within LU632_RS03530 at 714.879 kb on + strand, within LU632_RS03530 at 714.880 kb on - strand, within LU632_RS03530 at 714.922 kb on + strand, within LU632_RS03530 at 714.980 kb on + strand, within LU632_RS03530 at 714.988 kb on + strand, within LU632_RS03530 at 715.009 kb on + strand, within LU632_RS03530 at 715.089 kb on + strand, within LU632_RS03530 at 715.089 kb on + strand, within LU632_RS03530 at 715.090 kb on - strand, within LU632_RS03530 at 715.168 kb on + strand, within LU632_RS03530 at 715.168 kb on + strand, within LU632_RS03530 at 715.168 kb on + strand, within LU632_RS03530 at 715.168 kb on + strand, within LU632_RS03530 at 715.168 kb on + strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.169 kb on - strand, within LU632_RS03530 at 715.334 kb on - strand, within LU632_RS03530 at 715.679 kb on + strand, within LU632_RS03530 at 715.713 kb on - strand, within LU632_RS03530 at 715.843 kb on + strand, within LU632_RS03530 at 715.844 kb on - strand, within LU632_RS03530 at 715.884 kb on + strand, within LU632_RS03530 at 715.953 kb on + strand, within LU632_RS03530 at 715.996 kb on + strand at 715.997 kb on - strand at 715.997 kb on - strand at 715.998 kb on + strand at 715.998 kb on + strand at 716.019 kb on + strand at 716.019 kb on + strand at 716.019 kb on + strand at 716.020 kb on - strand at 716.020 kb on - strand at 716.020 kb on - strand at 716.042 kb on - strand at 716.080 kb on + strand at 716.081 kb on - strand at 716.131 kb on - strand at 716.159 kb on - strand at 716.369 kb on - strand at 716.458 kb on + strand, within LU632_RS03535 at 716.459 kb on - strand, within LU632_RS03535 at 716.554 kb on + strand, within LU632_RS03535 at 716.555 kb on - strand, within LU632_RS03535 at 716.566 kb on + strand, within LU632_RS03535 at 716.632 kb on + strand, within LU632_RS03535 at 716.633 kb on - strand, within LU632_RS03535 at 716.633 kb on - strand, within LU632_RS03535 at 716.869 kb on + strand at 716.870 kb on - strand at 716.870 kb on - strand at 716.870 kb on - strand at 716.881 kb on + strand at 716.898 kb on - strand at 716.898 kb on - strand at 716.906 kb on + strand at 716.906 kb on + strand at 716.907 kb on - strand at 717.105 kb on - strand, within LU632_RS03540 at 717.165 kb on + strand, within LU632_RS03540 at 717.166 kb on - strand, within LU632_RS03540 at 717.211 kb on - strand, within LU632_RS03540
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 713,053 - +2.1 713,198 - LU632_RS03520 0.26 +0.1 713,291 - LU632_RS03520 0.39 +0.3 713,311 + LU632_RS03520 0.42 +0.0 713,326 + LU632_RS03520 0.44 -0.4 713,404 - LU632_RS03520 0.55 +0.2 713,404 - LU632_RS03520 0.55 -0.1 713,422 - LU632_RS03520 0.57 -1.1 713,422 - LU632_RS03520 0.57 -1.1 713,424 + LU632_RS03520 0.58 +0.3 713,445 - LU632_RS03520 0.61 +0.3 713,445 - LU632_RS03520 0.61 -1.1 713,507 + LU632_RS03520 0.69 +0.5 713,531 - LU632_RS03520 0.73 +0.6 713,541 - LU632_RS03520 0.74 +0.0 713,550 - LU632_RS03520 0.76 +0.0 713,550 - LU632_RS03520 0.76 +0.9 713,611 + LU632_RS03520 0.84 -1.7 713,735 + +0.4 713,736 - +0.0 713,736 - -1.1 713,738 + -1.1 713,739 - -0.7 713,885 + LU632_RS03525 0.59 +1.3 713,886 - LU632_RS03525 0.59 +3.0 713,914 - LU632_RS03525 0.69 -0.6 713,960 + LU632_RS03525 0.85 +0.6 713,961 - LU632_RS03525 0.86 -0.5 713,961 - LU632_RS03525 0.86 +0.5 713,961 - LU632_RS03525 0.86 -2.3 713,998 + +1.2 713,998 + +0.3 713,998 + +1.1 713,998 + -0.3 714,014 + -0.5 714,014 + +1.3 714,014 + +0.3 714,015 - -0.0 714,015 - -0.2 714,015 - +1.2 714,059 + +1.9 714,060 - +0.1 714,068 + +2.0 714,069 - +0.9 714,095 - -0.7 714,095 - +0.6 714,303 + LU632_RS03530 0.14 +0.0 714,303 + LU632_RS03530 0.14 -0.1 714,344 - LU632_RS03530 0.16 -0.9 714,344 - LU632_RS03530 0.16 -1.2 714,350 + LU632_RS03530 0.16 -1.7 714,351 - LU632_RS03530 0.16 +0.4 714,351 - LU632_RS03530 0.16 +1.4 714,374 - LU632_RS03530 0.17 +1.0 714,387 - LU632_RS03530 0.18 -2.8 714,388 + LU632_RS03530 0.18 +1.2 714,403 + LU632_RS03530 0.18 +0.1 714,403 + LU632_RS03530 0.18 -1.7 714,404 - LU632_RS03530 0.18 +0.9 714,440 - LU632_RS03530 0.20 +0.0 714,490 + LU632_RS03530 0.22 +3.0 714,518 + LU632_RS03530 0.24 +0.9 714,519 - LU632_RS03530 0.24 -1.1 714,519 - LU632_RS03530 0.24 -1.8 714,590 + LU632_RS03530 0.27 -1.6 714,620 - LU632_RS03530 0.28 -0.5 714,851 + LU632_RS03530 0.39 -0.5 714,852 + LU632_RS03530 0.39 -1.1 714,879 + LU632_RS03530 0.40 +0.1 714,879 + LU632_RS03530 0.40 -1.1 714,880 - LU632_RS03530 0.40 -0.1 714,922 + LU632_RS03530 0.42 -1.1 714,980 + LU632_RS03530 0.44 -2.1 714,988 + LU632_RS03530 0.45 -1.2 715,009 + LU632_RS03530 0.46 +1.3 715,089 + LU632_RS03530 0.49 -1.5 715,089 + LU632_RS03530 0.49 -0.1 715,090 - LU632_RS03530 0.49 +0.5 715,168 + LU632_RS03530 0.53 -0.4 715,168 + LU632_RS03530 0.53 +0.9 715,168 + LU632_RS03530 0.53 -0.6 715,168 + LU632_RS03530 0.53 -0.3 715,168 + LU632_RS03530 0.53 +0.5 715,169 - LU632_RS03530 0.53 +0.7 715,169 - LU632_RS03530 0.53 +1.1 715,169 - LU632_RS03530 0.53 +0.5 715,169 - LU632_RS03530 0.53 -0.7 715,169 - LU632_RS03530 0.53 +0.9 715,169 - LU632_RS03530 0.53 +0.5 715,169 - LU632_RS03530 0.53 -1.7 715,169 - LU632_RS03530 0.53 -1.2 715,334 - LU632_RS03530 0.60 -0.5 715,679 + LU632_RS03530 0.76 +0.5 715,713 - LU632_RS03530 0.77 +2.3 715,843 + LU632_RS03530 0.83 -1.6 715,844 - LU632_RS03530 0.83 +1.0 715,884 + LU632_RS03530 0.85 +0.7 715,953 + LU632_RS03530 0.88 -0.6 715,996 + +1.6 715,997 - +0.9 715,997 - +0.1 715,998 + -0.8 715,998 + -2.1 716,019 + +0.9 716,019 + -0.7 716,019 + -2.4 716,020 - -0.8 716,020 - -0.6 716,020 - -0.2 716,042 - +2.1 716,080 + -0.5 716,081 - -1.4 716,131 - +0.3 716,159 - +1.2 716,369 - -2.0 716,458 + LU632_RS03535 0.27 -1.0 716,459 - LU632_RS03535 0.28 +1.0 716,554 + LU632_RS03535 0.49 -0.5 716,555 - LU632_RS03535 0.49 +0.7 716,566 + LU632_RS03535 0.52 +0.9 716,632 + LU632_RS03535 0.67 +0.0 716,633 - LU632_RS03535 0.67 -0.4 716,633 - LU632_RS03535 0.67 -1.1 716,869 + -2.0 716,870 - -1.1 716,870 - -0.0 716,870 - +1.4 716,881 + +0.4 716,898 - -1.1 716,898 - +1.4 716,906 + -0.2 716,906 + +0.3 716,907 - -0.1 717,105 - LU632_RS03540 0.34 +0.8 717,165 + LU632_RS03540 0.42 -0.7 717,166 - LU632_RS03540 0.42 -2.2 717,211 - LU632_RS03540 0.48 -0.1
Or see this region's nucleotide sequence