Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03400 and LU632_RS03405 are separated by 9 nucleotides LU632_RS03405 and LU632_RS03410 are separated by 129 nucleotides LU632_RS03410 and LU632_RS03415 are separated by 8 nucleotides LU632_RS03415 and LU632_RS03420 are separated by 178 nucleotides LU632_RS03420 and LU632_RS03425 are separated by 163 nucleotides LU632_RS03425 and LU632_RS03430 are separated by 201 nucleotides
LU632_RS03400: LU632_RS03400 - integrase family protein, at 696,173 to 697,573
_RS03400
LU632_RS03405: LU632_RS03405 - hypothetical protein, at 697,583 to 698,206
_RS03405
LU632_RS03410: LU632_RS03410 - helix-turn-helix domain-containing protein, at 698,336 to 698,536
_RS03410
LU632_RS03415: LU632_RS03415 - hypothetical protein, at 698,545 to 698,988
_RS03415
LU632_RS03420: LU632_RS03420 - hypothetical protein, at 699,167 to 699,355
_RS03420
LU632_RS03425: LU632_RS03425 - hypothetical protein, at 699,519 to 699,755
_RS03425
LU632_RS03430: LU632_RS03430 - DUF4222 domain-containing protein, at 699,957 to 700,199
_RS03430
Position (kb) 698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 697.582 kb on + strand at 697.725 kb on + strand, within LU632_RS03405 at 697.827 kb on + strand, within LU632_RS03405 at 697.828 kb on - strand, within LU632_RS03405 at 697.991 kb on - strand, within LU632_RS03405 at 698.242 kb on + strand at 698.247 kb on - strand at 698.253 kb on + strand at 698.260 kb on + strand at 698.261 kb on - strand at 698.261 kb on - strand at 698.262 kb on + strand at 698.262 kb on + strand at 698.263 kb on - strand at 698.264 kb on + strand at 698.265 kb on - strand at 698.271 kb on + strand at 698.320 kb on - strand at 698.336 kb on - strand at 698.344 kb on - strand at 698.347 kb on - strand at 698.354 kb on - strand at 698.448 kb on - strand, within LU632_RS03410 at 698.484 kb on - strand, within LU632_RS03410 at 698.484 kb on - strand, within LU632_RS03410 at 698.508 kb on - strand, within LU632_RS03410 at 698.508 kb on - strand, within LU632_RS03410 at 698.508 kb on - strand, within LU632_RS03410 at 698.680 kb on + strand, within LU632_RS03415 at 698.682 kb on + strand, within LU632_RS03415 at 698.683 kb on - strand, within LU632_RS03415 at 698.683 kb on - strand, within LU632_RS03415 at 698.758 kb on + strand, within LU632_RS03415 at 699.045 kb on + strand at 699.045 kb on + strand at 699.045 kb on + strand at 699.090 kb on + strand at 699.140 kb on + strand at 699.484 kb on + strand at 699.521 kb on - strand at 699.546 kb on - strand, within LU632_RS03425 at 699.546 kb on - strand, within LU632_RS03425 at 699.563 kb on - strand, within LU632_RS03425 at 699.566 kb on + strand, within LU632_RS03425 at 699.566 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.622 kb on + strand, within LU632_RS03425 at 699.623 kb on - strand, within LU632_RS03425 at 699.623 kb on - strand, within LU632_RS03425 at 699.759 kb on + strand at 699.826 kb on - strand at 699.858 kb on - strand at 699.858 kb on - strand at 699.885 kb on + strand at 699.886 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 697,582 + +0.1 697,725 + LU632_RS03405 0.23 -1.7 697,827 + LU632_RS03405 0.39 -1.3 697,828 - LU632_RS03405 0.39 +2.3 697,991 - LU632_RS03405 0.65 -1.7 698,242 + +2.7 698,247 - -1.1 698,253 + -2.1 698,260 + -0.9 698,261 - +0.4 698,261 - -0.2 698,262 + -1.0 698,262 + -2.1 698,263 - -0.2 698,264 + -0.2 698,265 - -1.5 698,271 + +1.6 698,320 - -2.7 698,336 - -1.6 698,344 - -1.5 698,347 - +3.3 698,354 - -0.8 698,448 - LU632_RS03410 0.56 +0.4 698,484 - LU632_RS03410 0.74 -0.5 698,484 - LU632_RS03410 0.74 -0.7 698,508 - LU632_RS03410 0.86 -0.8 698,508 - LU632_RS03410 0.86 -0.6 698,508 - LU632_RS03410 0.86 +1.4 698,680 + LU632_RS03415 0.30 -1.6 698,682 + LU632_RS03415 0.31 +0.8 698,683 - LU632_RS03415 0.31 +0.3 698,683 - LU632_RS03415 0.31 +2.1 698,758 + LU632_RS03415 0.48 +1.7 699,045 + -2.8 699,045 + +1.0 699,045 + +0.2 699,090 + -0.6 699,140 + -1.5 699,484 + +0.1 699,521 - +1.9 699,546 - LU632_RS03425 0.11 +0.9 699,546 - LU632_RS03425 0.11 -1.8 699,563 - LU632_RS03425 0.19 +2.9 699,566 + LU632_RS03425 0.20 -0.1 699,566 + LU632_RS03425 0.20 +1.1 699,622 + LU632_RS03425 0.43 -0.5 699,622 + LU632_RS03425 0.43 -0.7 699,622 + LU632_RS03425 0.43 -1.2 699,622 + LU632_RS03425 0.43 +0.5 699,622 + LU632_RS03425 0.43 +0.3 699,622 + LU632_RS03425 0.43 -1.9 699,623 - LU632_RS03425 0.44 +0.1 699,623 - LU632_RS03425 0.44 -0.6 699,759 + +2.2 699,826 - -2.1 699,858 - -0.3 699,858 - -1.4 699,885 + +0.7 699,886 - +0.9
Or see this region's nucleotide sequence