Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03360 and LU632_RS03365 are separated by 377 nucleotides LU632_RS03365 and LU632_RS03370 are separated by 53 nucleotides LU632_RS03370 and LU632_RS03375 are separated by 4 nucleotides LU632_RS03375 and LU632_RS03380 overlap by 4 nucleotides
LU632_RS03360: LU632_RS03360 - methyl-accepting chemotaxis protein, at 689,620 to 691,278
_RS03360
LU632_RS03365: LU632_RS03365 - IS1 family transposase, at 691,656 to 692,353
_RS03365
LU632_RS03370: LU632_RS03370 - integrase, at 692,407 to 692,592
_RS03370
LU632_RS03375: LU632_RS03375 - Fic family protein, at 692,597 to 693,211
_RS03375
LU632_RS03380: LU632_RS03380 - hypothetical protein, at 693,208 to 693,366
_RS03380
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 690.681 kb on + strand, within LU632_RS03360 at 690.681 kb on + strand, within LU632_RS03360 at 690.688 kb on - strand, within LU632_RS03360 at 690.731 kb on + strand, within LU632_RS03360 at 690.731 kb on + strand, within LU632_RS03360 at 690.779 kb on - strand, within LU632_RS03360 at 690.779 kb on - strand, within LU632_RS03360 at 690.795 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.808 kb on + strand, within LU632_RS03360 at 690.809 kb on - strand, within LU632_RS03360 at 690.809 kb on - strand, within LU632_RS03360 at 690.868 kb on - strand, within LU632_RS03360 at 690.989 kb on + strand, within LU632_RS03360 at 690.989 kb on + strand, within LU632_RS03360 at 691.000 kb on - strand, within LU632_RS03360 at 691.086 kb on - strand, within LU632_RS03360 at 691.096 kb on - strand, within LU632_RS03360 at 691.117 kb on + strand at 691.117 kb on + strand at 691.117 kb on + strand at 691.118 kb on - strand at 691.153 kb on - strand at 691.201 kb on + strand at 691.201 kb on + strand at 691.282 kb on - strand at 691.282 kb on - strand at 691.282 kb on - strand at 691.283 kb on + strand at 691.283 kb on + strand at 691.284 kb on - strand at 691.284 kb on - strand at 691.284 kb on - strand at 691.366 kb on - strand at 691.389 kb on - strand at 691.431 kb on + strand at 691.432 kb on - strand at 691.473 kb on + strand at 691.473 kb on + strand at 691.474 kb on - strand at 691.474 kb on - strand at 691.595 kb on + strand at 691.596 kb on - strand at 691.612 kb on + strand at 691.629 kb on + strand at 691.630 kb on - strand at 691.630 kb on - strand at 692.378 kb on + strand at 692.378 kb on + strand at 692.378 kb on + strand at 692.473 kb on + strand, within LU632_RS03370 at 692.614 kb on + strand at 692.615 kb on - strand at 692.615 kb on - strand at 692.615 kb on - strand at 692.665 kb on + strand, within LU632_RS03375 at 692.666 kb on - strand, within LU632_RS03375 at 692.668 kb on + strand, within LU632_RS03375 at 692.668 kb on + strand, within LU632_RS03375 at 692.742 kb on + strand, within LU632_RS03375 at 692.742 kb on + strand, within LU632_RS03375 at 692.743 kb on - strand, within LU632_RS03375 at 692.785 kb on + strand, within LU632_RS03375 at 692.785 kb on + strand, within LU632_RS03375 at 692.786 kb on - strand, within LU632_RS03375 at 692.822 kb on + strand, within LU632_RS03375 at 692.823 kb on - strand, within LU632_RS03375 at 692.823 kb on - strand, within LU632_RS03375 at 692.856 kb on + strand, within LU632_RS03375 at 692.860 kb on + strand, within LU632_RS03375 at 692.958 kb on + strand, within LU632_RS03375 at 693.167 kb on + strand at 693.168 kb on - strand at 693.168 kb on - strand at 693.168 kb on - strand at 693.196 kb on + strand at 693.197 kb on - strand at 693.197 kb on - strand at 693.198 kb on + strand at 693.199 kb on - strand at 693.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 690,681 + LU632_RS03360 0.64 +0.1 690,681 + LU632_RS03360 0.64 -0.6 690,688 - LU632_RS03360 0.64 -1.3 690,731 + LU632_RS03360 0.67 +1.4 690,731 + LU632_RS03360 0.67 +0.5 690,779 - LU632_RS03360 0.70 -0.1 690,779 - LU632_RS03360 0.70 -0.5 690,795 + LU632_RS03360 0.71 -0.4 690,808 + LU632_RS03360 0.72 +1.9 690,808 + LU632_RS03360 0.72 -0.5 690,808 + LU632_RS03360 0.72 -0.4 690,808 + LU632_RS03360 0.72 +0.8 690,808 + LU632_RS03360 0.72 -0.9 690,809 - LU632_RS03360 0.72 -0.5 690,809 - LU632_RS03360 0.72 -0.8 690,868 - LU632_RS03360 0.75 -1.2 690,989 + LU632_RS03360 0.83 +0.9 690,989 + LU632_RS03360 0.83 -0.1 691,000 - LU632_RS03360 0.83 +0.0 691,086 - LU632_RS03360 0.88 -0.9 691,096 - LU632_RS03360 0.89 -1.3 691,117 + +2.4 691,117 + +0.4 691,117 + +0.5 691,118 - +0.9 691,153 - +0.4 691,201 + +0.1 691,201 + +1.2 691,282 - -0.5 691,282 - +3.3 691,282 - -1.8 691,283 + -0.5 691,283 + -1.7 691,284 - +0.0 691,284 - -0.3 691,284 - -1.0 691,366 - -1.1 691,389 - -0.1 691,431 + -1.1 691,432 - -2.5 691,473 + +0.3 691,473 + +1.3 691,474 - -0.6 691,474 - +0.3 691,595 + -0.7 691,596 - -0.9 691,612 + -0.7 691,629 + +0.7 691,630 - -0.4 691,630 - +0.0 692,378 + +0.1 692,378 + -0.6 692,378 + +0.2 692,473 + LU632_RS03370 0.35 -0.2 692,614 + +1.4 692,615 - +0.4 692,615 - -1.3 692,615 - +1.9 692,665 + LU632_RS03375 0.11 -0.2 692,666 - LU632_RS03375 0.11 -2.3 692,668 + LU632_RS03375 0.12 +0.1 692,668 + LU632_RS03375 0.12 -0.2 692,742 + LU632_RS03375 0.24 +0.1 692,742 + LU632_RS03375 0.24 -0.4 692,743 - LU632_RS03375 0.24 +0.7 692,785 + LU632_RS03375 0.31 -2.5 692,785 + LU632_RS03375 0.31 -2.5 692,786 - LU632_RS03375 0.31 -0.2 692,822 + LU632_RS03375 0.37 -2.6 692,823 - LU632_RS03375 0.37 -0.5 692,823 - LU632_RS03375 0.37 +0.1 692,856 + LU632_RS03375 0.42 +1.1 692,860 + LU632_RS03375 0.43 +1.6 692,958 + LU632_RS03375 0.59 +2.0 693,167 + +0.4 693,168 - -0.1 693,168 - +0.3 693,168 - +0.4 693,196 + -0.6 693,197 - +0.8 693,197 - -0.9 693,198 + -1.4 693,199 - +0.4 693,199 - -0.2
Or see this region's nucleotide sequence