Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03335 and LU632_RS03340 are separated by 1 nucleotides LU632_RS03340 and LU632_RS03345 are separated by 99 nucleotides
LU632_RS03335: LU632_RS03335 - ABC transporter ATP-binding protein, at 683,528 to 684,571
_RS03335
LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069
_RS03340
LU632_RS03345: LU632_RS03345 - iron ABC transporter substrate-binding protein, at 686,169 to 687,173
_RS03345
Position (kb) 684
685
686
687 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 683.709 kb on - strand, within LU632_RS03335 at 683.738 kb on + strand, within LU632_RS03335 at 683.876 kb on - strand, within LU632_RS03335 at 684.196 kb on - strand, within LU632_RS03335 at 684.367 kb on + strand, within LU632_RS03335 at 684.547 kb on + strand at 684.571 kb on + strand at 684.571 kb on + strand at 684.572 kb on - strand at 684.572 kb on - strand at 684.574 kb on + strand at 684.574 kb on + strand at 684.575 kb on - strand at 684.653 kb on - strand at 684.946 kb on + strand, within LU632_RS03340 at 685.176 kb on + strand, within LU632_RS03340 at 685.446 kb on - strand, within LU632_RS03340 at 685.534 kb on + strand, within LU632_RS03340 at 685.654 kb on + strand, within LU632_RS03340 at 685.787 kb on - strand, within LU632_RS03340 at 685.860 kb on - strand, within LU632_RS03340 at 685.917 kb on - strand, within LU632_RS03340 at 686.069 kb on + strand at 686.302 kb on + strand, within LU632_RS03345 at 686.303 kb on - strand, within LU632_RS03345 at 686.420 kb on + strand, within LU632_RS03345 at 686.456 kb on - strand, within LU632_RS03345 at 686.458 kb on + strand, within LU632_RS03345 at 686.515 kb on + strand, within LU632_RS03345 at 686.521 kb on + strand, within LU632_RS03345 at 686.577 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 686.910 kb on - strand, within LU632_RS03345 at 687.033 kb on - strand, within LU632_RS03345
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 683,709 - LU632_RS03335 0.17 -0.1 683,738 + LU632_RS03335 0.20 -0.7 683,876 - LU632_RS03335 0.33 -0.3 684,196 - LU632_RS03335 0.64 -0.2 684,367 + LU632_RS03335 0.80 -0.1 684,547 + -0.1 684,571 + -1.6 684,571 + -0.5 684,572 - -1.0 684,572 - -0.7 684,574 + +2.5 684,574 + -0.1 684,575 - -1.8 684,653 - +1.2 684,946 + LU632_RS03340 0.25 -0.7 685,176 + LU632_RS03340 0.40 -1.8 685,446 - LU632_RS03340 0.58 -2.1 685,534 + LU632_RS03340 0.64 +0.2 685,654 + LU632_RS03340 0.72 -1.4 685,787 - LU632_RS03340 0.81 -0.7 685,860 - LU632_RS03340 0.86 +1.2 685,917 - LU632_RS03340 0.90 -1.1 686,069 + -0.4 686,302 + LU632_RS03345 0.13 +0.2 686,303 - LU632_RS03345 0.13 +4.4 686,420 + LU632_RS03345 0.25 +1.7 686,456 - LU632_RS03345 0.29 -1.3 686,458 + LU632_RS03345 0.29 -2.3 686,515 + LU632_RS03345 0.34 -0.0 686,521 + LU632_RS03345 0.35 -1.3 686,577 - LU632_RS03345 0.41 -2.2 686,910 - LU632_RS03345 0.74 +2.6 686,910 - LU632_RS03345 0.74 -0.4 686,910 - LU632_RS03345 0.74 -0.9 687,033 - LU632_RS03345 0.86 +0.7
Or see this region's nucleotide sequence