Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03330 and LU632_RS03335 are separated by 467 nucleotides LU632_RS03335 and LU632_RS03340 are separated by 1 nucleotides
LU632_RS03330: LU632_RS03330 - LacI family DNA-binding transcriptional regulator, at 682,053 to 683,060
_RS03330
LU632_RS03335: LU632_RS03335 - ABC transporter ATP-binding protein, at 683,528 to 684,571
_RS03335
LU632_RS03340: LU632_RS03340 - iron ABC transporter permease, at 684,573 to 686,069
_RS03340
Position (kb) 683
684
685 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 682.729 kb on - strand, within LU632_RS03330 at 682.729 kb on - strand, within LU632_RS03330 at 682.839 kb on + strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.840 kb on - strand, within LU632_RS03330 at 682.841 kb on + strand, within LU632_RS03330 at 682.842 kb on - strand, within LU632_RS03330 at 682.842 kb on - strand, within LU632_RS03330 at 682.899 kb on + strand, within LU632_RS03330 at 682.899 kb on + strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.900 kb on - strand, within LU632_RS03330 at 682.905 kb on + strand, within LU632_RS03330 at 682.906 kb on - strand, within LU632_RS03330 at 682.925 kb on + strand, within LU632_RS03330 at 683.029 kb on + strand at 683.057 kb on - strand at 683.057 kb on - strand at 683.071 kb on + strand at 683.071 kb on + strand at 683.071 kb on + strand at 683.076 kb on + strand at 683.126 kb on + strand at 683.127 kb on - strand at 683.156 kb on + strand at 683.156 kb on + strand at 683.207 kb on + strand at 683.207 kb on + strand at 683.307 kb on - strand at 683.307 kb on - strand at 683.350 kb on + strand at 683.350 kb on + strand at 683.384 kb on + strand at 683.385 kb on - strand at 683.385 kb on - strand at 683.385 kb on - strand at 683.418 kb on + strand at 683.425 kb on + strand at 683.426 kb on - strand at 683.454 kb on + strand at 683.455 kb on - strand at 683.540 kb on - strand at 683.709 kb on - strand, within LU632_RS03335 at 683.738 kb on + strand, within LU632_RS03335 at 683.876 kb on - strand, within LU632_RS03335 at 684.196 kb on - strand, within LU632_RS03335 at 684.367 kb on + strand, within LU632_RS03335 at 684.547 kb on + strand at 684.571 kb on + strand at 684.571 kb on + strand at 684.572 kb on - strand at 684.572 kb on - strand at 684.574 kb on + strand at 684.574 kb on + strand at 684.575 kb on - strand at 684.653 kb on - strand at 684.946 kb on + strand, within LU632_RS03340 at 685.176 kb on + strand, within LU632_RS03340 at 685.446 kb on - strand, within LU632_RS03340 at 685.534 kb on + strand, within LU632_RS03340
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 682,729 - LU632_RS03330 0.67 +3.0 682,729 - LU632_RS03330 0.67 +0.5 682,839 + LU632_RS03330 0.78 +0.9 682,840 - LU632_RS03330 0.78 +1.8 682,840 - LU632_RS03330 0.78 +2.6 682,840 - LU632_RS03330 0.78 +0.3 682,841 + LU632_RS03330 0.78 +0.9 682,842 - LU632_RS03330 0.78 +1.4 682,842 - LU632_RS03330 0.78 -0.5 682,899 + LU632_RS03330 0.84 +0.8 682,899 + LU632_RS03330 0.84 +1.1 682,900 - LU632_RS03330 0.84 -0.1 682,900 - LU632_RS03330 0.84 +1.2 682,900 - LU632_RS03330 0.84 +2.5 682,900 - LU632_RS03330 0.84 -0.2 682,900 - LU632_RS03330 0.84 +0.3 682,905 + LU632_RS03330 0.85 -0.1 682,906 - LU632_RS03330 0.85 +5.4 682,925 + LU632_RS03330 0.87 +0.3 683,029 + +1.1 683,057 - -0.3 683,057 - +2.0 683,071 + +1.2 683,071 + -0.1 683,071 + +0.5 683,076 + +0.3 683,126 + +0.7 683,127 - +1.1 683,156 + +0.1 683,156 + +0.1 683,207 + -0.4 683,207 + -0.3 683,307 - -0.5 683,307 - +2.8 683,350 + -0.6 683,350 + -2.1 683,384 + -1.2 683,385 - +0.2 683,385 - +0.9 683,385 - +2.2 683,418 + +1.4 683,425 + -0.4 683,426 - -1.2 683,454 + -2.2 683,455 - +0.5 683,540 - -0.6 683,709 - LU632_RS03335 0.17 -0.1 683,738 + LU632_RS03335 0.20 -0.7 683,876 - LU632_RS03335 0.33 -0.3 684,196 - LU632_RS03335 0.64 -0.2 684,367 + LU632_RS03335 0.80 -0.1 684,547 + -0.1 684,571 + -1.6 684,571 + -0.5 684,572 - -1.0 684,572 - -0.7 684,574 + +2.5 684,574 + -0.1 684,575 - -1.8 684,653 - +1.2 684,946 + LU632_RS03340 0.25 -0.7 685,176 + LU632_RS03340 0.40 -1.8 685,446 - LU632_RS03340 0.58 -2.1 685,534 + LU632_RS03340 0.64 +0.2
Or see this region's nucleotide sequence