Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03305 and LU632_RS03310 overlap by 1 nucleotides LU632_RS03310 and LU632_RS03315 are separated by 172 nucleotides LU632_RS03315 and LU632_RS03320 are separated by 181 nucleotides
LU632_RS03305: LU632_RS03305 - sucrose-specific PTS transporter subunit IIBC, at 677,591 to 678,961
_RS03305
LU632_RS03310: LU632_RS03310 - sucrose-6-phosphate hydrolase, at 678,961 to 680,370
_RS03310
LU632_RS03315: LU632_RS03315 - MbeD family mobilization/exclusion protein, at 680,543 to 680,757
_RS03315
LU632_RS03320: LU632_RS03320 - hypothetical protein, at 680,939 to 681,630
_RS03320
Position (kb) 678
679
680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 678.026 kb on + strand, within LU632_RS03305 at 678.026 kb on + strand, within LU632_RS03305 at 678.027 kb on - strand, within LU632_RS03305 at 678.029 kb on - strand, within LU632_RS03305 at 678.359 kb on - strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.418 kb on + strand, within LU632_RS03305 at 678.419 kb on - strand, within LU632_RS03305 at 678.489 kb on - strand, within LU632_RS03305 at 678.514 kb on - strand, within LU632_RS03305 at 678.533 kb on - strand, within LU632_RS03305 at 678.729 kb on + strand, within LU632_RS03305 at 678.730 kb on - strand, within LU632_RS03305 at 678.812 kb on + strand, within LU632_RS03305 at 678.813 kb on - strand, within LU632_RS03305 at 678.877 kb on + strand at 678.877 kb on + strand at 678.878 kb on - strand at 678.881 kb on + strand at 678.881 kb on + strand at 678.881 kb on + strand at 678.882 kb on - strand at 678.882 kb on - strand at 678.882 kb on - strand at 678.882 kb on - strand at 678.929 kb on + strand at 678.929 kb on + strand at 678.937 kb on + strand at 678.938 kb on - strand at 678.938 kb on - strand at 679.303 kb on + strand, within LU632_RS03310 at 679.303 kb on + strand, within LU632_RS03310 at 679.304 kb on - strand, within LU632_RS03310 at 679.304 kb on - strand, within LU632_RS03310 at 679.355 kb on + strand, within LU632_RS03310 at 679.383 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.433 kb on + strand, within LU632_RS03310 at 679.434 kb on - strand, within LU632_RS03310 at 679.434 kb on - strand, within LU632_RS03310 at 679.434 kb on - strand, within LU632_RS03310 at 679.474 kb on - strand, within LU632_RS03310 at 679.479 kb on - strand, within LU632_RS03310 at 679.603 kb on + strand, within LU632_RS03310 at 679.648 kb on + strand, within LU632_RS03310 at 679.746 kb on + strand, within LU632_RS03310 at 679.746 kb on + strand, within LU632_RS03310 at 679.746 kb on + strand, within LU632_RS03310 at 679.747 kb on - strand, within LU632_RS03310 at 679.747 kb on - strand, within LU632_RS03310 at 679.749 kb on + strand, within LU632_RS03310 at 679.749 kb on + strand, within LU632_RS03310 at 679.749 kb on + strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.750 kb on - strand, within LU632_RS03310 at 679.753 kb on + strand, within LU632_RS03310 at 679.755 kb on + strand, within LU632_RS03310 at 679.799 kb on - strand, within LU632_RS03310 at 679.957 kb on + strand, within LU632_RS03310 at 679.958 kb on - strand, within LU632_RS03310 at 680.010 kb on + strand, within LU632_RS03310 at 680.061 kb on - strand, within LU632_RS03310 at 680.086 kb on - strand, within LU632_RS03310 at 680.091 kb on + strand, within LU632_RS03310 at 680.092 kb on - strand, within LU632_RS03310 at 680.348 kb on + strand at 680.349 kb on - strand at 680.368 kb on + strand at 680.411 kb on + strand at 680.411 kb on + strand at 680.537 kb on + strand at 680.538 kb on - strand at 680.565 kb on + strand, within LU632_RS03315 at 680.565 kb on + strand, within LU632_RS03315 at 680.566 kb on - strand, within LU632_RS03315 at 680.566 kb on - strand, within LU632_RS03315 at 680.592 kb on - strand, within LU632_RS03315 at 680.597 kb on + strand, within LU632_RS03315 at 680.598 kb on - strand, within LU632_RS03315 at 680.598 kb on - strand, within LU632_RS03315 at 680.601 kb on + strand, within LU632_RS03315 at 680.602 kb on - strand, within LU632_RS03315 at 680.602 kb on - strand, within LU632_RS03315 at 680.668 kb on + strand, within LU632_RS03315 at 680.845 kb on - strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.845 kb on - strand at 680.944 kb on + strand at 681.012 kb on + strand, within LU632_RS03320 at 681.108 kb on - strand, within LU632_RS03320 at 681.108 kb on - strand, within LU632_RS03320 at 681.119 kb on + strand, within LU632_RS03320 at 681.283 kb on + strand, within LU632_RS03320 at 681.283 kb on + strand, within LU632_RS03320 at 681.333 kb on - strand, within LU632_RS03320 at 681.333 kb on - strand, within LU632_RS03320
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 678,026 + LU632_RS03305 0.32 -1.5 678,026 + LU632_RS03305 0.32 -1.3 678,027 - LU632_RS03305 0.32 -2.5 678,029 - LU632_RS03305 0.32 -0.3 678,359 - LU632_RS03305 0.56 -1.0 678,418 + LU632_RS03305 0.60 -1.6 678,418 + LU632_RS03305 0.60 +1.2 678,419 - LU632_RS03305 0.60 -1.1 678,489 - LU632_RS03305 0.65 -1.8 678,514 - LU632_RS03305 0.67 -1.3 678,533 - LU632_RS03305 0.69 -0.4 678,729 + LU632_RS03305 0.83 -4.2 678,730 - LU632_RS03305 0.83 -1.2 678,812 + LU632_RS03305 0.89 -2.0 678,813 - LU632_RS03305 0.89 +0.3 678,877 + -1.3 678,877 + -3.6 678,878 - +0.3 678,881 + -1.6 678,881 + -0.9 678,881 + -0.6 678,882 - -1.6 678,882 - +0.1 678,882 - -2.4 678,882 - -2.7 678,929 + -2.0 678,929 + -2.5 678,937 + -0.8 678,938 - +0.3 678,938 - -0.2 679,303 + LU632_RS03310 0.24 -1.7 679,303 + LU632_RS03310 0.24 -2.1 679,304 - LU632_RS03310 0.24 -3.2 679,304 - LU632_RS03310 0.24 -2.8 679,355 + LU632_RS03310 0.28 -2.5 679,383 + LU632_RS03310 0.30 -2.1 679,433 + LU632_RS03310 0.33 -2.5 679,433 + LU632_RS03310 0.33 -2.7 679,433 + LU632_RS03310 0.33 -3.4 679,433 + LU632_RS03310 0.33 -1.4 679,434 - LU632_RS03310 0.34 -4.5 679,434 - LU632_RS03310 0.34 -2.8 679,434 - LU632_RS03310 0.34 -1.3 679,474 - LU632_RS03310 0.36 -3.0 679,479 - LU632_RS03310 0.37 -0.4 679,603 + LU632_RS03310 0.46 -0.8 679,648 + LU632_RS03310 0.49 -1.8 679,746 + LU632_RS03310 0.56 +0.9 679,746 + LU632_RS03310 0.56 +0.7 679,746 + LU632_RS03310 0.56 +1.2 679,747 - LU632_RS03310 0.56 +0.3 679,747 - LU632_RS03310 0.56 -0.1 679,749 + LU632_RS03310 0.56 -0.8 679,749 + LU632_RS03310 0.56 -2.5 679,749 + LU632_RS03310 0.56 -1.7 679,750 - LU632_RS03310 0.56 -1.2 679,750 - LU632_RS03310 0.56 -3.5 679,750 - LU632_RS03310 0.56 +1.9 679,750 - LU632_RS03310 0.56 -1.4 679,753 + LU632_RS03310 0.56 -2.8 679,755 + LU632_RS03310 0.56 -0.8 679,799 - LU632_RS03310 0.59 +1.3 679,957 + LU632_RS03310 0.71 -2.6 679,958 - LU632_RS03310 0.71 -2.9 680,010 + LU632_RS03310 0.74 -0.9 680,061 - LU632_RS03310 0.78 -1.6 680,086 - LU632_RS03310 0.80 -1.9 680,091 + LU632_RS03310 0.80 -0.1 680,092 - LU632_RS03310 0.80 -0.4 680,348 + -2.3 680,349 - -0.7 680,368 + +0.1 680,411 + +0.3 680,411 + -1.7 680,537 + +0.9 680,538 - -0.9 680,565 + LU632_RS03315 0.10 -1.5 680,565 + LU632_RS03315 0.10 +0.1 680,566 - LU632_RS03315 0.11 +1.2 680,566 - LU632_RS03315 0.11 -1.3 680,592 - LU632_RS03315 0.23 -0.5 680,597 + LU632_RS03315 0.25 +0.4 680,598 - LU632_RS03315 0.26 -2.3 680,598 - LU632_RS03315 0.26 -1.0 680,601 + LU632_RS03315 0.27 -0.3 680,602 - LU632_RS03315 0.27 -0.3 680,602 - LU632_RS03315 0.27 +1.1 680,668 + LU632_RS03315 0.58 +0.7 680,845 - +0.1 680,845 - +0.5 680,845 - -0.0 680,845 - -1.1 680,944 + -0.3 681,012 + LU632_RS03320 0.11 +0.9 681,108 - LU632_RS03320 0.24 +4.0 681,108 - LU632_RS03320 0.24 +1.1 681,119 + LU632_RS03320 0.26 +3.9 681,283 + LU632_RS03320 0.50 +0.9 681,283 + LU632_RS03320 0.50 +0.2 681,333 - LU632_RS03320 0.57 +0.3 681,333 - LU632_RS03320 0.57 +1.3
Or see this region's nucleotide sequence