Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS03060 and LU632_RS03065 overlap by 4 nucleotides LU632_RS03065 and aroP are separated by 352 nucleotides aroP and pdhR are separated by 356 nucleotides
LU632_RS03060: LU632_RS03060 - IS1 family transposase, at 624,497 to 625,000
_RS03060
LU632_RS03065: LU632_RS03065 - hypothetical protein, at 624,997 to 625,014
_RS03065
LU632_RS03070: aroP - aromatic amino acid transporter AroP, at 625,367 to 626,722
aroP
LU632_RS03075: pdhR - pyruvate dehydrogenase complex transcriptional repressor PdhR, at 627,079 to 627,843
pdhR
Position (kb) 625
626
627 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 624.505 kb on - strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.258 kb on + strand at 625.259 kb on - strand at 625.261 kb on - strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.323 kb on + strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.324 kb on - strand at 625.414 kb on + strand at 625.414 kb on + strand at 625.471 kb on + strand at 625.471 kb on + strand at 625.476 kb on - strand at 625.484 kb on - strand at 625.484 kb on - strand at 625.551 kb on - strand, within aroP at 625.612 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.674 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.678 kb on + strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.679 kb on - strand, within aroP at 625.811 kb on - strand, within aroP at 625.828 kb on + strand, within aroP at 625.828 kb on + strand, within aroP at 625.950 kb on + strand, within aroP at 625.983 kb on + strand, within aroP at 625.984 kb on - strand, within aroP at 626.023 kb on + strand, within aroP at 626.066 kb on - strand, within aroP at 626.098 kb on + strand, within aroP at 626.098 kb on + strand, within aroP at 626.098 kb on + strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.099 kb on - strand, within aroP at 626.131 kb on + strand, within aroP at 626.163 kb on - strand, within aroP at 626.171 kb on + strand, within aroP at 626.173 kb on + strand, within aroP at 626.174 kb on - strand, within aroP at 626.174 kb on - strand, within aroP at 626.205 kb on - strand, within aroP at 626.255 kb on - strand, within aroP at 626.321 kb on + strand, within aroP at 626.380 kb on - strand, within aroP at 626.418 kb on - strand, within aroP at 626.433 kb on + strand, within aroP at 626.472 kb on + strand, within aroP at 626.477 kb on - strand, within aroP at 626.477 kb on - strand, within aroP at 626.575 kb on - strand, within aroP at 626.722 kb on + strand at 626.722 kb on + strand at 626.722 kb on + strand at 626.723 kb on - strand at 626.723 kb on - strand at 626.724 kb on + strand at 626.724 kb on + strand at 626.724 kb on + strand at 626.725 kb on - strand at 626.725 kb on - strand at 626.726 kb on + strand at 626.727 kb on - strand at 626.857 kb on + strand at 626.929 kb on + strand at 626.929 kb on + strand at 626.934 kb on + strand at 626.935 kb on - strand at 626.985 kb on + strand at 626.987 kb on + strand at 626.987 kb on + strand at 626.987 kb on + strand at 626.988 kb on - strand at 627.010 kb on + strand at 627.230 kb on + strand, within pdhR at 627.405 kb on + strand, within pdhR at 627.418 kb on + strand, within pdhR at 627.418 kb on + strand, within pdhR at 627.418 kb on + strand, within pdhR at 627.428 kb on + strand, within pdhR at 627.428 kb on + strand, within pdhR at 627.428 kb on + strand, within pdhR at 627.564 kb on + strand, within pdhR at 627.564 kb on + strand, within pdhR at 627.564 kb on + strand, within pdhR
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 624,505 - +0.6 625,258 + +0.1 625,258 + -0.1 625,258 + -0.2 625,259 - +1.8 625,261 - -0.7 625,323 + +0.6 625,323 + +0.8 625,323 + -1.2 625,323 + -1.2 625,324 - -1.9 625,324 - -0.4 625,324 - -2.1 625,324 - +0.8 625,324 - +1.1 625,414 + -0.3 625,414 + -1.0 625,471 + +0.9 625,471 + -0.0 625,476 - +0.3 625,484 - +0.8 625,484 - +0.0 625,551 - aroP LU632_RS03070 0.14 +0.8 625,612 + aroP LU632_RS03070 0.18 -1.2 625,674 + aroP LU632_RS03070 0.23 -0.0 625,674 + aroP LU632_RS03070 0.23 +0.5 625,678 + aroP LU632_RS03070 0.23 -0.2 625,678 + aroP LU632_RS03070 0.23 -0.4 625,679 - aroP LU632_RS03070 0.23 -0.3 625,679 - aroP LU632_RS03070 0.23 -1.4 625,679 - aroP LU632_RS03070 0.23 +2.0 625,811 - aroP LU632_RS03070 0.33 +0.9 625,828 + aroP LU632_RS03070 0.34 -0.1 625,828 + aroP LU632_RS03070 0.34 +2.9 625,950 + aroP LU632_RS03070 0.43 +2.0 625,983 + aroP LU632_RS03070 0.45 +1.6 625,984 - aroP LU632_RS03070 0.46 -1.1 626,023 + aroP LU632_RS03070 0.48 +0.4 626,066 - aroP LU632_RS03070 0.52 -0.1 626,098 + aroP LU632_RS03070 0.54 +0.3 626,098 + aroP LU632_RS03070 0.54 -0.8 626,098 + aroP LU632_RS03070 0.54 +1.3 626,099 - aroP LU632_RS03070 0.54 -0.6 626,099 - aroP LU632_RS03070 0.54 -0.3 626,099 - aroP LU632_RS03070 0.54 -0.5 626,099 - aroP LU632_RS03070 0.54 +2.0 626,099 - aroP LU632_RS03070 0.54 +0.6 626,099 - aroP LU632_RS03070 0.54 -2.3 626,131 + aroP LU632_RS03070 0.56 -1.8 626,163 - aroP LU632_RS03070 0.59 -0.4 626,171 + aroP LU632_RS03070 0.59 -0.4 626,173 + aroP LU632_RS03070 0.59 +0.3 626,174 - aroP LU632_RS03070 0.60 +0.5 626,174 - aroP LU632_RS03070 0.60 +1.7 626,205 - aroP LU632_RS03070 0.62 -0.1 626,255 - aroP LU632_RS03070 0.65 +0.1 626,321 + aroP LU632_RS03070 0.70 +0.3 626,380 - aroP LU632_RS03070 0.75 -0.1 626,418 - aroP LU632_RS03070 0.78 -0.9 626,433 + aroP LU632_RS03070 0.79 -0.7 626,472 + aroP LU632_RS03070 0.81 +0.0 626,477 - aroP LU632_RS03070 0.82 +0.5 626,477 - aroP LU632_RS03070 0.82 -0.4 626,575 - aroP LU632_RS03070 0.89 +0.2 626,722 + -0.2 626,722 + -1.1 626,722 + +0.3 626,723 - -0.3 626,723 - +0.5 626,724 + -2.3 626,724 + +1.1 626,724 + -0.3 626,725 - -0.5 626,725 - -0.6 626,726 + +1.1 626,727 - +0.9 626,857 + +1.1 626,929 + +1.0 626,929 + +1.1 626,934 + +2.5 626,935 - -1.7 626,985 + -1.1 626,987 + +0.7 626,987 + -0.7 626,987 + +3.5 626,988 - -1.7 627,010 + -0.1 627,230 + pdhR LU632_RS03075 0.20 -0.5 627,405 + pdhR LU632_RS03075 0.43 +3.0 627,418 + pdhR LU632_RS03075 0.44 +0.9 627,418 + pdhR LU632_RS03075 0.44 -2.1 627,418 + pdhR LU632_RS03075 0.44 +1.9 627,428 + pdhR LU632_RS03075 0.46 +0.1 627,428 + pdhR LU632_RS03075 0.46 +0.9 627,428 + pdhR LU632_RS03075 0.46 +0.9 627,564 + pdhR LU632_RS03075 0.63 +0.7 627,564 + pdhR LU632_RS03075 0.63 -0.1 627,564 + pdhR LU632_RS03075 0.63 -0.2
Or see this region's nucleotide sequence