Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt polB and LU632_RS02815 are separated by 77 nucleotides LU632_RS02815 and LU632_RS02820 are separated by 158 nucleotides
LU632_RS02810: polB - DNA polymerase II, at 570,626 to 572,986
polB
LU632_RS02815: LU632_RS02815 - transposase, at 573,064 to 573,488
_RS02815
LU632_RS02820: LU632_RS02820 - DedA family protein, at 573,647 to 574,414
_RS02820
Position (kb) 573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 572.356 kb on + strand, within polB at 572.391 kb on + strand, within polB at 572.443 kb on + strand, within polB at 572.443 kb on + strand, within polB at 572.444 kb on - strand, within polB at 572.444 kb on - strand, within polB at 572.444 kb on - strand, within polB at 572.445 kb on + strand, within polB at 572.445 kb on + strand, within polB at 572.446 kb on - strand, within polB at 572.446 kb on - strand, within polB at 572.446 kb on - strand, within polB at 572.446 kb on - strand, within polB at 572.446 kb on - strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.447 kb on + strand, within polB at 572.448 kb on - strand, within polB at 572.448 kb on - strand, within polB at 572.448 kb on - strand, within polB at 572.484 kb on + strand, within polB at 572.486 kb on + strand, within polB at 572.487 kb on - strand, within polB at 572.626 kb on - strand, within polB at 572.670 kb on + strand, within polB at 572.671 kb on - strand, within polB at 572.671 kb on - strand, within polB at 572.678 kb on + strand, within polB at 573.021 kb on + strand at 573.021 kb on + strand at 573.021 kb on + strand at 573.021 kb on + strand at 573.022 kb on - strand at 573.228 kb on - strand, within LU632_RS02815 at 573.228 kb on - strand, within LU632_RS02815 at 573.445 kb on + strand, within LU632_RS02815 at 573.472 kb on - strand at 573.476 kb on + strand at 573.517 kb on + strand at 573.518 kb on - strand at 573.521 kb on + strand at 573.521 kb on + strand at 573.521 kb on + strand at 573.521 kb on + strand at 573.522 kb on - strand at 573.523 kb on + strand at 573.552 kb on + strand at 573.553 kb on - strand at 573.553 kb on - strand at 573.647 kb on - strand at 573.647 kb on - strand at 573.670 kb on + strand at 573.670 kb on + strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.671 kb on - strand at 573.672 kb on + strand at 573.672 kb on + strand at 573.916 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 573.975 kb on + strand, within LU632_RS02820 at 574.093 kb on - strand, within LU632_RS02820 at 574.160 kb on - strand, within LU632_RS02820 at 574.165 kb on + strand, within LU632_RS02820 at 574.172 kb on - strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.177 kb on + strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.178 kb on - strand, within LU632_RS02820 at 574.343 kb on - strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.386 kb on + strand at 574.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 572,356 + polB LU632_RS02810 0.73 -0.1 572,391 + polB LU632_RS02810 0.75 -0.7 572,443 + polB LU632_RS02810 0.77 +2.2 572,443 + polB LU632_RS02810 0.77 +1.0 572,444 - polB LU632_RS02810 0.77 +2.7 572,444 - polB LU632_RS02810 0.77 -0.8 572,444 - polB LU632_RS02810 0.77 +0.3 572,445 + polB LU632_RS02810 0.77 -2.1 572,445 + polB LU632_RS02810 0.77 -3.4 572,446 - polB LU632_RS02810 0.77 -1.3 572,446 - polB LU632_RS02810 0.77 -1.4 572,446 - polB LU632_RS02810 0.77 +3.6 572,446 - polB LU632_RS02810 0.77 +2.4 572,446 - polB LU632_RS02810 0.77 -1.0 572,447 + polB LU632_RS02810 0.77 +0.1 572,447 + polB LU632_RS02810 0.77 -0.2 572,447 + polB LU632_RS02810 0.77 -0.2 572,447 + polB LU632_RS02810 0.77 +0.4 572,447 + polB LU632_RS02810 0.77 +0.4 572,447 + polB LU632_RS02810 0.77 +0.4 572,447 + polB LU632_RS02810 0.77 -0.5 572,447 + polB LU632_RS02810 0.77 +0.4 572,447 + polB LU632_RS02810 0.77 +1.4 572,448 - polB LU632_RS02810 0.77 -1.2 572,448 - polB LU632_RS02810 0.77 +0.3 572,448 - polB LU632_RS02810 0.77 -0.1 572,484 + polB LU632_RS02810 0.79 -1.7 572,486 + polB LU632_RS02810 0.79 +0.8 572,487 - polB LU632_RS02810 0.79 -0.0 572,626 - polB LU632_RS02810 0.85 -0.8 572,670 + polB LU632_RS02810 0.87 +0.6 572,671 - polB LU632_RS02810 0.87 -2.7 572,671 - polB LU632_RS02810 0.87 -1.0 572,678 + polB LU632_RS02810 0.87 -0.3 573,021 + +0.7 573,021 + -1.4 573,021 + -0.3 573,021 + -0.5 573,022 - +0.8 573,228 - LU632_RS02815 0.39 -0.7 573,228 - LU632_RS02815 0.39 -1.2 573,445 + LU632_RS02815 0.90 -1.9 573,472 - +0.5 573,476 + -0.3 573,517 + +0.7 573,518 - -0.5 573,521 + -0.6 573,521 + +0.0 573,521 + -2.1 573,521 + -1.0 573,522 - +0.0 573,523 + -1.8 573,552 + -0.6 573,553 - +0.2 573,553 - +1.4 573,647 - -0.5 573,647 - -1.4 573,670 + -0.8 573,670 + -0.2 573,671 - +0.3 573,671 - +0.8 573,671 - -0.9 573,671 - +1.1 573,672 + -1.7 573,672 + -0.8 573,916 + LU632_RS02820 0.35 +1.4 573,975 + LU632_RS02820 0.43 -0.5 573,975 + LU632_RS02820 0.43 +0.3 573,975 + LU632_RS02820 0.43 -0.8 574,093 - LU632_RS02820 0.58 -0.8 574,160 - LU632_RS02820 0.67 +1.4 574,165 + LU632_RS02820 0.67 +1.1 574,172 - LU632_RS02820 0.68 +1.2 574,177 + LU632_RS02820 0.69 -0.9 574,177 + LU632_RS02820 0.69 -2.0 574,177 + LU632_RS02820 0.69 +1.0 574,178 - LU632_RS02820 0.69 +0.6 574,178 - LU632_RS02820 0.69 -0.8 574,178 - LU632_RS02820 0.69 +2.1 574,343 - +3.2 574,386 + -0.1 574,386 + -0.5 574,386 + +3.7 574,412 + -0.4
Or see this region's nucleotide sequence