Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02790

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
564,286	+		LU632_RS02785	0.70	+2.4
564,409	+		LU632_RS02785	0.77	+2.6
564,423	-		LU632_RS02785	0.78	+1.2
564,442	+		LU632_RS02785	0.79	+2.2
564,442	+		LU632_RS02785	0.79	-0.6
564,442	+		LU632_RS02785	0.79	-1.6
564,635	+				+2.0
564,635	+				-0.5
564,636	-				+0.2
564,636	-				+0.2
564,636	-				-1.0
564,639	+				-1.3
564,685	+				+0.4
564,766	+				-1.3
565,048	+				-0.8
565,049	-				+2.2
565,049	-				-0.1
565,049	-				-1.3
565,309	+				-0.5
565,451	-		LU632_RS02790	0.36	+3.1
565,466	+		LU632_RS02790	0.38	+1.1
565,467	-		LU632_RS02790	0.39	-1.0
565,467	-		LU632_RS02790	0.39	+1.1
565,467	-		LU632_RS02790	0.39	+3.4
565,530	+		LU632_RS02790	0.50	-0.6
565,531	-		LU632_RS02790	0.51	+1.7
565,559	+		LU632_RS02790	0.56	+2.6
565,559	+		LU632_RS02790	0.56	-0.1
565,559	+		LU632_RS02790	0.56	-0.3
565,599	+		LU632_RS02790	0.63	+1.0
565,600	-		LU632_RS02790	0.63	-1.2
565,769	-				+0.5
565,811	+				-0.1
565,812	-				+0.5
565,813	+				+1.4
565,813	+				+0.3
565,852	+				-1.3
565,853	-				-0.5
566,008	+				+0.6
566,009	-				+1.2
566,483	+				+0.4
566,536	+				-1.9
566,536	+				+2.5
566,537	-				+0.4
566,537	-				-0.8
566,540	+				-1.2
566,541	-				-0.0
566,541	-				-0.0
566,661	-				+1.2
566,717	-				+1.2
566,771	-				+0.3