Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02535 and LU632_RS02540 are separated by 519 nucleotides LU632_RS02540 and serB are separated by 123 nucleotides
LU632_RS02535: LU632_RS02535 - IS1 family transposase, at 503,277 to 503,974
_RS02535
LU632_RS02540: LU632_RS02540 - YtjB family periplasmic protein, at 504,494 to 505,156
_RS02540
LU632_RS02545: serB - phosphoserine phosphatase, at 505,280 to 506,257
serB
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 504.003 kb on - strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.030 kb on + strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.031 kb on - strand at 504.032 kb on + strand at 504.035 kb on - strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.042 kb on + strand at 504.043 kb on - strand at 504.091 kb on + strand at 504.269 kb on - strand at 504.305 kb on - strand at 504.625 kb on + strand, within LU632_RS02540 at 504.625 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.659 kb on + strand, within LU632_RS02540 at 504.789 kb on + strand, within LU632_RS02540 at 504.913 kb on + strand, within LU632_RS02540 at 505.082 kb on + strand, within LU632_RS02540 at 505.083 kb on - strand, within LU632_RS02540 at 505.175 kb on - strand at 505.175 kb on - strand at 505.205 kb on + strand at 505.205 kb on + strand at 505.206 kb on - strand at 505.278 kb on + strand at 505.279 kb on - strand at 505.286 kb on - strand at 505.289 kb on - strand at 505.319 kb on - strand at 505.319 kb on - strand at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.660 kb on + strand, within serB at 505.661 kb on - strand, within serB at 505.661 kb on - strand, within serB at 505.903 kb on + strand, within serB at 505.907 kb on + strand, within serB at 505.919 kb on + strand, within serB at 506.009 kb on - strand, within serB at 506.026 kb on + strand, within serB at 506.026 kb on + strand, within serB at 506.027 kb on - strand, within serB
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 504,003 - -0.7 504,030 + +1.1 504,030 + -1.3 504,030 + +0.1 504,030 + +0.2 504,030 + +1.3 504,030 + +1.0 504,030 + +2.8 504,030 + +2.6 504,031 - +2.0 504,031 - -1.3 504,031 - +0.2 504,031 - +0.8 504,031 - -1.7 504,031 - -0.6 504,031 - +0.1 504,031 - +0.2 504,031 - -0.4 504,032 + +0.2 504,035 - +1.4 504,042 + +1.4 504,042 + -0.7 504,042 + +1.3 504,043 - +1.0 504,091 + +0.6 504,269 - +2.4 504,305 - -0.9 504,625 + LU632_RS02540 0.20 -0.4 504,625 + LU632_RS02540 0.20 -2.0 504,659 + LU632_RS02540 0.25 +2.0 504,659 + LU632_RS02540 0.25 -2.2 504,659 + LU632_RS02540 0.25 +1.0 504,789 + LU632_RS02540 0.44 -1.1 504,913 + LU632_RS02540 0.63 -0.8 505,082 + LU632_RS02540 0.89 -0.6 505,083 - LU632_RS02540 0.89 -1.0 505,175 - +0.5 505,175 - -0.1 505,205 + -0.6 505,205 + -0.0 505,206 - -0.8 505,278 + -1.9 505,279 - -0.8 505,286 - +1.0 505,289 - -1.5 505,319 - +1.0 505,319 - +1.0 505,660 + serB LU632_RS02545 0.39 +0.4 505,660 + serB LU632_RS02545 0.39 +0.4 505,660 + serB LU632_RS02545 0.39 +2.0 505,660 + serB LU632_RS02545 0.39 +1.0 505,661 - serB LU632_RS02545 0.39 -1.0 505,661 - serB LU632_RS02545 0.39 +0.4 505,903 + serB LU632_RS02545 0.64 +0.4 505,907 + serB LU632_RS02545 0.64 +0.4 505,919 + serB LU632_RS02545 0.65 +1.0 506,009 - serB LU632_RS02545 0.75 +1.0 506,026 + serB LU632_RS02545 0.76 -1.5 506,026 + serB LU632_RS02545 0.76 -0.8 506,027 - serB LU632_RS02545 0.76 +2.0
Or see this region's nucleotide sequence