Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02270 and LU632_RS02275 are separated by 307 nucleotides LU632_RS02275 and LU632_RS02280 are separated by 230 nucleotides LU632_RS02280 and LU632_RS02285 overlap by 1 nucleotides LU632_RS02285 and LU632_RS02290 are separated by 2 nucleotides LU632_RS02290 and LU632_RS02295 are separated by 35 nucleotides
LU632_RS02270: LU632_RS02270 - hypothetical protein, at 449,311 to 449,604
_RS02270
LU632_RS02275: LU632_RS02275 - DoxX family protein, at 449,912 to 450,304
_RS02275
LU632_RS02280: LU632_RS02280 - YqjK-like family protein, at 450,535 to 450,816
_RS02280
LU632_RS02285: LU632_RS02285 - phage holin family protein, at 450,816 to 451,208
_RS02285
LU632_RS02290: LU632_RS02290 - YqjD family protein, at 451,211 to 451,516
_RS02290
LU632_RS02295: LU632_RS02295 - DUF1090 domain-containing protein, at 451,552 to 451,926
_RS02295
Position (kb) 450
451 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 449.544 kb on + strand, within LU632_RS02270 at 449.600 kb on + strand at 449.657 kb on + strand at 450.062 kb on - strand, within LU632_RS02275 at 450.074 kb on + strand, within LU632_RS02275 at 450.193 kb on + strand, within LU632_RS02275 at 450.194 kb on - strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.195 kb on + strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.196 kb on - strand, within LU632_RS02275 at 450.299 kb on - strand at 450.308 kb on + strand at 450.368 kb on - strand at 450.551 kb on + strand at 450.574 kb on - strand, within LU632_RS02280 at 450.707 kb on + strand, within LU632_RS02280 at 450.802 kb on + strand at 450.802 kb on + strand at 450.802 kb on + strand at 450.803 kb on - strand at 450.803 kb on - strand at 450.832 kb on - strand at 450.849 kb on - strand at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.982 kb on - strand, within LU632_RS02285 at 450.993 kb on - strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.995 kb on + strand, within LU632_RS02285 at 450.996 kb on - strand, within LU632_RS02285 at 450.999 kb on + strand, within LU632_RS02285 at 451.029 kb on - strand, within LU632_RS02285 at 451.163 kb on + strand, within LU632_RS02285 at 451.313 kb on + strand, within LU632_RS02290 at 451.369 kb on + strand, within LU632_RS02290 at 451.443 kb on - strand, within LU632_RS02290 at 451.446 kb on - strand, within LU632_RS02290 at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.516 kb on + strand at 451.520 kb on + strand at 451.521 kb on - strand at 451.521 kb on - strand at 451.528 kb on + strand at 451.528 kb on + strand at 451.529 kb on - strand at 451.532 kb on + strand at 451.681 kb on + strand, within LU632_RS02295 at 451.726 kb on + strand, within LU632_RS02295 at 451.783 kb on + strand, within LU632_RS02295
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 449,544 + LU632_RS02270 0.79 +1.2 449,600 + +0.8 449,657 + +0.0 450,062 - LU632_RS02275 0.38 +1.7 450,074 + LU632_RS02275 0.41 +1.7 450,193 + LU632_RS02275 0.72 +3.0 450,194 - LU632_RS02275 0.72 -0.6 450,195 + LU632_RS02275 0.72 -1.0 450,195 + LU632_RS02275 0.72 +1.3 450,195 + LU632_RS02275 0.72 +0.2 450,196 - LU632_RS02275 0.72 +0.7 450,196 - LU632_RS02275 0.72 +2.0 450,196 - LU632_RS02275 0.72 -0.5 450,299 - -0.9 450,308 + -2.0 450,368 - -1.8 450,551 + +0.2 450,574 - LU632_RS02280 0.14 -1.3 450,707 + LU632_RS02280 0.61 -1.3 450,802 + -1.2 450,802 + -0.7 450,802 + -1.2 450,803 - +0.2 450,803 - -0.3 450,832 - +0.1 450,849 - +2.0 450,982 - LU632_RS02285 0.42 +0.9 450,982 - LU632_RS02285 0.42 -0.2 450,982 - LU632_RS02285 0.42 +1.5 450,993 - LU632_RS02285 0.45 -0.5 450,995 + LU632_RS02285 0.46 -0.6 450,995 + LU632_RS02285 0.46 +0.4 450,996 - LU632_RS02285 0.46 +0.2 450,999 + LU632_RS02285 0.47 -0.6 451,029 - LU632_RS02285 0.54 -0.4 451,163 + LU632_RS02285 0.88 +0.1 451,313 + LU632_RS02290 0.33 -1.4 451,369 + LU632_RS02290 0.52 +1.2 451,443 - LU632_RS02290 0.76 +0.4 451,446 - LU632_RS02290 0.77 +0.4 451,516 + +1.0 451,516 + -0.0 451,516 + +0.2 451,516 + +0.4 451,516 + -3.1 451,520 + +0.5 451,521 - -0.8 451,521 - +1.1 451,528 + -1.3 451,528 + -1.3 451,529 - -0.1 451,532 + +0.8 451,681 + LU632_RS02295 0.34 +0.4 451,726 + LU632_RS02295 0.46 -0.6 451,783 + LU632_RS02295 0.62 -0.3
Or see this region's nucleotide sequence