Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02205 and yraP are separated by 85 nucleotides yraP and diaA are separated by 10 nucleotides diaA and LU632_RS02220 are separated by 32 nucleotides
LU632_RS02205: LU632_RS02205 - BglG family transcription antiterminator, at 435,288 to 437,198
_RS02205
LU632_RS02210: yraP - divisome-associated lipoprotein YraP, at 437,284 to 437,856
yraP
LU632_RS02215: diaA - DnaA initiator-associating protein DiaA, at 437,867 to 438,457
diaA
LU632_RS02220: LU632_RS02220 - YraN family protein, at 438,490 to 438,882
_RS02220
LU632_RS02225: LU632_RS02225 - penicillin-binding protein activator, at 438,840 to 440,888
_RS02225
Position (kb) 437
438 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 436.327 kb on + strand, within LU632_RS02205 at 436.327 kb on + strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.328 kb on - strand, within LU632_RS02205 at 436.390 kb on - strand, within LU632_RS02205 at 436.391 kb on + strand, within LU632_RS02205 at 436.464 kb on + strand, within LU632_RS02205 at 436.465 kb on - strand, within LU632_RS02205 at 436.465 kb on - strand, within LU632_RS02205 at 436.504 kb on + strand, within LU632_RS02205 at 436.504 kb on + strand, within LU632_RS02205 at 436.504 kb on + strand, within LU632_RS02205 at 436.517 kb on + strand, within LU632_RS02205 at 436.602 kb on + strand, within LU632_RS02205 at 436.620 kb on - strand, within LU632_RS02205 at 436.983 kb on + strand, within LU632_RS02205 at 436.984 kb on - strand, within LU632_RS02205 at 437.031 kb on + strand at 437.031 kb on + strand at 437.088 kb on + strand at 437.108 kb on + strand at 437.186 kb on - strand at 437.296 kb on - strand at 437.299 kb on - strand at 437.308 kb on - strand at 437.392 kb on + strand, within yraP at 437.392 kb on + strand, within yraP at 437.485 kb on - strand, within yraP at 437.485 kb on - strand, within yraP at 437.537 kb on + strand, within yraP at 437.538 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.683 kb on - strand, within yraP at 437.816 kb on - strand at 437.830 kb on + strand at 437.858 kb on + strand at 437.859 kb on - strand at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.932 kb on + strand, within diaA at 437.933 kb on - strand, within diaA at 437.996 kb on + strand, within diaA at 437.996 kb on + strand, within diaA at 437.997 kb on - strand, within diaA at 437.997 kb on - strand, within diaA at 438.049 kb on + strand, within diaA at 438.083 kb on + strand, within diaA at 438.084 kb on - strand, within diaA at 438.098 kb on - strand, within diaA at 438.112 kb on + strand, within diaA at 438.211 kb on + strand, within diaA at 438.331 kb on + strand, within diaA at 438.419 kb on + strand at 438.419 kb on + strand at 438.420 kb on - strand at 438.420 kb on - strand at 438.422 kb on - strand at 438.422 kb on - strand at 438.442 kb on + strand at 438.547 kb on + strand, within LU632_RS02220 at 438.548 kb on - strand, within LU632_RS02220 at 438.548 kb on - strand, within LU632_RS02220 at 438.602 kb on - strand, within LU632_RS02220 at 438.667 kb on + strand, within LU632_RS02220 at 438.668 kb on - strand, within LU632_RS02220 at 438.676 kb on - strand, within LU632_RS02220 at 438.714 kb on + strand, within LU632_RS02220
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 436,327 + LU632_RS02205 0.54 -0.2 436,327 + LU632_RS02205 0.54 +2.0 436,328 - LU632_RS02205 0.54 +0.1 436,328 - LU632_RS02205 0.54 -0.2 436,328 - LU632_RS02205 0.54 +1.2 436,328 - LU632_RS02205 0.54 -0.1 436,390 - LU632_RS02205 0.58 +0.2 436,391 + LU632_RS02205 0.58 -0.8 436,464 + LU632_RS02205 0.62 +0.6 436,465 - LU632_RS02205 0.62 +0.2 436,465 - LU632_RS02205 0.62 -1.0 436,504 + LU632_RS02205 0.64 +0.1 436,504 + LU632_RS02205 0.64 -0.0 436,504 + LU632_RS02205 0.64 -0.8 436,517 + LU632_RS02205 0.64 -0.7 436,602 + LU632_RS02205 0.69 -0.6 436,620 - LU632_RS02205 0.70 -0.1 436,983 + LU632_RS02205 0.89 +2.3 436,984 - LU632_RS02205 0.89 -0.0 437,031 + -1.0 437,031 + -0.3 437,088 + +2.0 437,108 + +1.5 437,186 - +0.7 437,296 - -1.2 437,299 - -1.9 437,308 - -2.8 437,392 + yraP LU632_RS02210 0.19 -0.0 437,392 + yraP LU632_RS02210 0.19 -0.8 437,485 - yraP LU632_RS02210 0.35 -0.0 437,485 - yraP LU632_RS02210 0.35 -1.5 437,537 + yraP LU632_RS02210 0.44 +0.4 437,538 - yraP LU632_RS02210 0.44 -0.0 437,683 - yraP LU632_RS02210 0.70 -0.5 437,683 - yraP LU632_RS02210 0.70 -1.5 437,683 - yraP LU632_RS02210 0.70 -1.2 437,816 - -0.3 437,830 + -2.9 437,858 + +0.4 437,859 - -1.2 437,932 + diaA LU632_RS02215 0.11 -0.2 437,932 + diaA LU632_RS02215 0.11 -0.7 437,932 + diaA LU632_RS02215 0.11 +2.6 437,933 - diaA LU632_RS02215 0.11 +0.8 437,996 + diaA LU632_RS02215 0.22 +0.1 437,996 + diaA LU632_RS02215 0.22 -0.6 437,997 - diaA LU632_RS02215 0.22 +1.0 437,997 - diaA LU632_RS02215 0.22 +0.3 438,049 + diaA LU632_RS02215 0.31 -1.2 438,083 + diaA LU632_RS02215 0.37 +3.0 438,084 - diaA LU632_RS02215 0.37 -1.9 438,098 - diaA LU632_RS02215 0.39 +2.0 438,112 + diaA LU632_RS02215 0.41 -2.1 438,211 + diaA LU632_RS02215 0.58 -0.5 438,331 + diaA LU632_RS02215 0.79 -0.6 438,419 + +1.7 438,419 + -1.5 438,420 - +2.3 438,420 - +0.5 438,422 - +0.8 438,422 - -2.2 438,442 + +0.3 438,547 + LU632_RS02220 0.15 +0.2 438,548 - LU632_RS02220 0.15 -0.7 438,548 - LU632_RS02220 0.15 -0.2 438,602 - LU632_RS02220 0.28 -0.5 438,667 + LU632_RS02220 0.45 -1.3 438,668 - LU632_RS02220 0.45 +0.5 438,676 - LU632_RS02220 0.47 +1.8 438,714 + LU632_RS02220 0.57 +0.4
Or see this region's nucleotide sequence