Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02110 and LU632_RS02115 are separated by 2 nucleotides LU632_RS02115 and ppa are separated by 304 nucleotides ppa and LU632_RS02125 are separated by 468 nucleotides
LU632_RS02110: LU632_RS02110 - translocation/assembly module TamB, at 415,446 to 419,213
_RS02110
LU632_RS02115: LU632_RS02115 - gamma-glutamylcyclotransferase, at 419,216 to 419,569
_RS02115
LU632_RS02120: ppa - inorganic diphosphatase, at 419,874 to 420,404
ppa
LU632_RS02125: LU632_RS02125 - methyl-accepting chemotaxis protein, at 420,873 to 422,435
_RS02125
Position (kb) 419
420
421 Strain fitness (log2 ratio) -2
-1
0
1
2 at 418.922 kb on - strand at 418.922 kb on - strand at 419.001 kb on - strand at 419.001 kb on - strand at 419.080 kb on + strand at 419.080 kb on + strand at 419.144 kb on + strand at 419.149 kb on + strand at 419.150 kb on - strand at 419.151 kb on + strand at 419.322 kb on - strand, within LU632_RS02115 at 419.635 kb on + strand at 419.641 kb on + strand at 419.642 kb on - strand at 419.680 kb on + strand at 419.802 kb on - strand at 420.471 kb on - strand at 420.561 kb on - strand at 420.676 kb on - strand at 420.710 kb on + strand at 420.793 kb on - strand at 420.796 kb on + strand at 420.796 kb on + strand at 420.820 kb on + strand at 420.869 kb on + strand at 420.871 kb on + strand at 421.025 kb on - strand at 421.050 kb on - strand, within LU632_RS02125 at 421.059 kb on + strand, within LU632_RS02125 at 421.059 kb on + strand, within LU632_RS02125 at 421.102 kb on + strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.103 kb on - strand, within LU632_RS02125 at 421.149 kb on + strand, within LU632_RS02125 at 421.149 kb on + strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.150 kb on - strand, within LU632_RS02125 at 421.214 kb on + strand, within LU632_RS02125 at 421.214 kb on + strand, within LU632_RS02125 at 421.255 kb on - strand, within LU632_RS02125 at 421.255 kb on - strand, within LU632_RS02125 at 421.304 kb on + strand, within LU632_RS02125 at 421.314 kb on + strand, within LU632_RS02125 at 421.315 kb on - strand, within LU632_RS02125 at 421.315 kb on - strand, within LU632_RS02125 at 421.364 kb on + strand, within LU632_RS02125
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 418,922 - +0.7 418,922 - -1.0 419,001 - +1.0 419,001 - -0.0 419,080 + +0.4 419,080 + +0.4 419,144 + -1.1 419,149 + -1.5 419,150 - -1.0 419,151 + +1.5 419,322 - LU632_RS02115 0.30 +2.0 419,635 + +0.2 419,641 + +0.8 419,642 - -0.8 419,680 + -0.8 419,802 - -1.8 420,471 - -1.7 420,561 - +2.0 420,676 - +0.4 420,710 + +1.2 420,793 - -0.3 420,796 + +0.3 420,796 + +0.2 420,820 + +1.1 420,869 + -0.6 420,871 + +1.9 421,025 - +1.1 421,050 - LU632_RS02125 0.11 +0.3 421,059 + LU632_RS02125 0.12 -1.1 421,059 + LU632_RS02125 0.12 +1.1 421,102 + LU632_RS02125 0.15 +1.0 421,103 - LU632_RS02125 0.15 -1.5 421,103 - LU632_RS02125 0.15 -0.1 421,103 - LU632_RS02125 0.15 -0.7 421,103 - LU632_RS02125 0.15 +0.8 421,149 + LU632_RS02125 0.18 +0.3 421,149 + LU632_RS02125 0.18 +0.4 421,150 - LU632_RS02125 0.18 -1.3 421,150 - LU632_RS02125 0.18 +0.0 421,150 - LU632_RS02125 0.18 +0.4 421,150 - LU632_RS02125 0.18 -0.6 421,150 - LU632_RS02125 0.18 +0.2 421,150 - LU632_RS02125 0.18 +1.1 421,214 + LU632_RS02125 0.22 -0.4 421,214 + LU632_RS02125 0.22 +0.4 421,255 - LU632_RS02125 0.24 -0.0 421,255 - LU632_RS02125 0.24 +0.5 421,304 + LU632_RS02125 0.28 +0.9 421,314 + LU632_RS02125 0.28 -0.0 421,315 - LU632_RS02125 0.28 +0.9 421,315 - LU632_RS02125 0.28 -0.2 421,364 + LU632_RS02125 0.31 -1.4
Or see this region's nucleotide sequence