Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS02090 and LU632_RS02095 are separated by 303 nucleotides LU632_RS02095 and LU632_RS02100 are separated by 121 nucleotides LU632_RS02100 and LU632_RS02105 are separated by 519 nucleotides
LU632_RS02090: LU632_RS02090 - YtfJ family protein, at 410,660 to 411,242
_RS02090
LU632_RS02095: LU632_RS02095 - DUF1107 domain-containing protein, at 411,546 to 411,752
_RS02095
LU632_RS02100: LU632_RS02100 - hemolysin family protein, at 411,874 to 413,205
_RS02100
LU632_RS02105: LU632_RS02105 - autotransporter assembly complex protein TamA, at 413,725 to 415,449
_RS02105
Position (kb) 411
412
413
414 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 410.897 kb on - strand, within LU632_RS02090 at 411.002 kb on + strand, within LU632_RS02090 at 411.043 kb on + strand, within LU632_RS02090 at 411.124 kb on - strand, within LU632_RS02090 at 411.168 kb on + strand, within LU632_RS02090 at 411.171 kb on - strand, within LU632_RS02090 at 411.263 kb on + strand at 411.330 kb on - strand at 411.330 kb on - strand at 411.339 kb on + strand at 411.370 kb on + strand at 411.382 kb on + strand at 411.383 kb on - strand at 411.468 kb on + strand at 411.468 kb on + strand at 411.584 kb on + strand, within LU632_RS02095 at 411.631 kb on + strand, within LU632_RS02095 at 411.632 kb on - strand, within LU632_RS02095 at 411.693 kb on + strand, within LU632_RS02095 at 411.694 kb on - strand, within LU632_RS02095 at 411.776 kb on - strand at 411.805 kb on + strand at 411.805 kb on + strand at 411.818 kb on - strand at 411.846 kb on - strand at 411.848 kb on + strand at 411.849 kb on - strand at 411.872 kb on - strand at 411.872 kb on - strand at 411.904 kb on - strand at 411.962 kb on + strand at 411.963 kb on - strand at 411.980 kb on - strand at 412.033 kb on - strand, within LU632_RS02100 at 412.033 kb on - strand, within LU632_RS02100 at 412.036 kb on + strand, within LU632_RS02100 at 412.036 kb on + strand, within LU632_RS02100 at 412.041 kb on + strand, within LU632_RS02100 at 412.042 kb on - strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.043 kb on + strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.044 kb on - strand, within LU632_RS02100 at 412.070 kb on + strand, within LU632_RS02100 at 412.070 kb on + strand, within LU632_RS02100 at 412.070 kb on + strand, within LU632_RS02100 at 412.115 kb on - strand, within LU632_RS02100 at 412.241 kb on - strand, within LU632_RS02100 at 412.371 kb on + strand, within LU632_RS02100 at 412.375 kb on + strand, within LU632_RS02100 at 412.375 kb on + strand, within LU632_RS02100 at 412.375 kb on + strand, within LU632_RS02100 at 412.375 kb on + strand, within LU632_RS02100 at 412.384 kb on - strand, within LU632_RS02100 at 412.412 kb on - strand, within LU632_RS02100 at 412.419 kb on + strand, within LU632_RS02100 at 412.430 kb on + strand, within LU632_RS02100 at 412.440 kb on + strand, within LU632_RS02100 at 412.441 kb on - strand, within LU632_RS02100 at 412.441 kb on - strand, within LU632_RS02100 at 412.458 kb on + strand, within LU632_RS02100 at 412.664 kb on + strand, within LU632_RS02100 at 412.665 kb on - strand, within LU632_RS02100 at 412.665 kb on - strand, within LU632_RS02100 at 412.665 kb on - strand, within LU632_RS02100 at 412.665 kb on - strand, within LU632_RS02100 at 412.680 kb on + strand, within LU632_RS02100 at 412.680 kb on + strand, within LU632_RS02100 at 412.680 kb on + strand, within LU632_RS02100 at 412.681 kb on - strand, within LU632_RS02100 at 412.681 kb on - strand, within LU632_RS02100 at 412.684 kb on - strand, within LU632_RS02100 at 412.684 kb on - strand, within LU632_RS02100 at 412.725 kb on + strand, within LU632_RS02100 at 412.899 kb on + strand, within LU632_RS02100 at 412.900 kb on - strand, within LU632_RS02100 at 413.061 kb on + strand, within LU632_RS02100 at 413.082 kb on + strand at 413.083 kb on - strand at 413.083 kb on - strand at 413.166 kb on + strand at 413.197 kb on - strand at 413.197 kb on - strand at 413.201 kb on - strand at 413.205 kb on + strand at 413.216 kb on + strand at 413.216 kb on + strand at 413.246 kb on - strand at 413.398 kb on + strand at 413.399 kb on - strand at 413.406 kb on + strand at 413.428 kb on + strand at 413.434 kb on + strand at 413.435 kb on - strand at 413.473 kb on + strand at 413.477 kb on + strand at 413.477 kb on + strand at 413.486 kb on + strand at 413.487 kb on - strand at 413.494 kb on + strand at 413.497 kb on - strand at 413.545 kb on - strand at 413.569 kb on + strand at 413.570 kb on - strand at 413.570 kb on - strand at 413.642 kb on + strand at 413.697 kb on + strand at 413.720 kb on - strand at 413.732 kb on - strand at 413.904 kb on - strand, within LU632_RS02105 at 413.904 kb on - strand, within LU632_RS02105 at 413.932 kb on + strand, within LU632_RS02105 at 414.006 kb on - strand, within LU632_RS02105 at 414.021 kb on + strand, within LU632_RS02105 at 414.080 kb on - strand, within LU632_RS02105 at 414.123 kb on - strand, within LU632_RS02105 at 414.140 kb on - strand, within LU632_RS02105 at 414.150 kb on + strand, within LU632_RS02105 at 414.168 kb on + strand, within LU632_RS02105 at 414.202 kb on + strand, within LU632_RS02105 at 414.203 kb on - strand, within LU632_RS02105
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 410,897 - LU632_RS02090 0.41 -1.1 411,002 + LU632_RS02090 0.59 -0.8 411,043 + LU632_RS02090 0.66 +0.3 411,124 - LU632_RS02090 0.80 +0.5 411,168 + LU632_RS02090 0.87 -1.3 411,171 - LU632_RS02090 0.88 -0.2 411,263 + -0.3 411,330 - +0.4 411,330 - -0.3 411,339 + +0.6 411,370 + +0.3 411,382 + +0.4 411,383 - +1.7 411,468 + -0.1 411,468 + -0.3 411,584 + LU632_RS02095 0.18 +1.8 411,631 + LU632_RS02095 0.41 +0.4 411,632 - LU632_RS02095 0.42 -2.2 411,693 + LU632_RS02095 0.71 +0.2 411,694 - LU632_RS02095 0.71 -0.6 411,776 - +2.6 411,805 + +1.7 411,805 + -1.5 411,818 - -0.8 411,846 - -0.9 411,848 + +0.3 411,849 - -0.3 411,872 - +1.5 411,872 - -0.8 411,904 - +0.4 411,962 + -3.2 411,963 - -1.6 411,980 - -0.6 412,033 - LU632_RS02100 0.12 -2.5 412,033 - LU632_RS02100 0.12 -1.5 412,036 + LU632_RS02100 0.12 +0.4 412,036 + LU632_RS02100 0.12 -2.1 412,041 + LU632_RS02100 0.13 -1.3 412,042 - LU632_RS02100 0.13 -0.0 412,043 + LU632_RS02100 0.13 -3.3 412,043 + LU632_RS02100 0.13 -2.4 412,043 + LU632_RS02100 0.13 -0.5 412,043 + LU632_RS02100 0.13 -2.7 412,043 + LU632_RS02100 0.13 -1.9 412,043 + LU632_RS02100 0.13 -2.9 412,043 + LU632_RS02100 0.13 -4.5 412,043 + LU632_RS02100 0.13 -1.7 412,043 + LU632_RS02100 0.13 -2.2 412,043 + LU632_RS02100 0.13 -1.5 412,043 + LU632_RS02100 0.13 -3.0 412,043 + LU632_RS02100 0.13 -0.6 412,043 + LU632_RS02100 0.13 +0.4 412,044 - LU632_RS02100 0.13 -5.7 412,044 - LU632_RS02100 0.13 -0.8 412,044 - LU632_RS02100 0.13 -3.6 412,044 - LU632_RS02100 0.13 -1.0 412,044 - LU632_RS02100 0.13 -2.2 412,070 + LU632_RS02100 0.15 -1.8 412,070 + LU632_RS02100 0.15 -0.8 412,070 + LU632_RS02100 0.15 -2.0 412,115 - LU632_RS02100 0.18 -2.4 412,241 - LU632_RS02100 0.28 -1.0 412,371 + LU632_RS02100 0.37 -3.6 412,375 + LU632_RS02100 0.38 -1.3 412,375 + LU632_RS02100 0.38 +2.0 412,375 + LU632_RS02100 0.38 -2.6 412,375 + LU632_RS02100 0.38 -1.3 412,384 - LU632_RS02100 0.38 -2.4 412,412 - LU632_RS02100 0.40 -0.3 412,419 + LU632_RS02100 0.41 -0.3 412,430 + LU632_RS02100 0.42 -2.3 412,440 + LU632_RS02100 0.42 -1.0 412,441 - LU632_RS02100 0.43 -1.9 412,441 - LU632_RS02100 0.43 -2.1 412,458 + LU632_RS02100 0.44 -0.6 412,664 + LU632_RS02100 0.59 -2.3 412,665 - LU632_RS02100 0.59 +1.0 412,665 - LU632_RS02100 0.59 -2.2 412,665 - LU632_RS02100 0.59 -0.3 412,665 - LU632_RS02100 0.59 -3.1 412,680 + LU632_RS02100 0.61 -1.5 412,680 + LU632_RS02100 0.61 -1.8 412,680 + LU632_RS02100 0.61 -3.7 412,681 - LU632_RS02100 0.61 -2.8 412,681 - LU632_RS02100 0.61 -2.9 412,684 - LU632_RS02100 0.61 -3.2 412,684 - LU632_RS02100 0.61 +0.4 412,725 + LU632_RS02100 0.64 -2.9 412,899 + LU632_RS02100 0.77 -2.8 412,900 - LU632_RS02100 0.77 -1.0 413,061 + LU632_RS02100 0.89 -0.8 413,082 + +1.0 413,083 - -1.5 413,083 - -3.0 413,166 + -0.3 413,197 - -1.7 413,197 - -3.3 413,201 - -1.0 413,205 + -1.6 413,216 + -1.8 413,216 + -3.0 413,246 - -1.1 413,398 + -2.0 413,399 - -1.2 413,406 + -4.1 413,428 + -0.8 413,434 + +1.0 413,435 - -0.0 413,473 + -1.2 413,477 + +1.8 413,477 + -1.3 413,486 + +0.8 413,487 - +1.0 413,494 + +3.9 413,497 - +0.4 413,545 - -1.3 413,569 + -0.5 413,570 - +1.6 413,570 - -0.3 413,642 + -1.3 413,697 + +0.6 413,720 - +0.4 413,732 - +0.1 413,904 - LU632_RS02105 0.10 -0.7 413,904 - LU632_RS02105 0.10 -0.5 413,932 + LU632_RS02105 0.12 -1.9 414,006 - LU632_RS02105 0.16 +0.6 414,021 + LU632_RS02105 0.17 -0.0 414,080 - LU632_RS02105 0.21 -2.7 414,123 - LU632_RS02105 0.23 +0.2 414,140 - LU632_RS02105 0.24 +2.0 414,150 + LU632_RS02105 0.25 +1.1 414,168 + LU632_RS02105 0.26 +1.6 414,202 + LU632_RS02105 0.28 +0.7 414,203 - LU632_RS02105 0.28 -0.4
Or see this region's nucleotide sequence