Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01995 and LU632_RS02000 are separated by 224 nucleotides LU632_RS02000 and LU632_RS02005 are separated by 71 nucleotides LU632_RS02005 and LU632_RS02010 are separated by 3 nucleotides
LU632_RS01995: LU632_RS01995 - type VI secretion system tube protein Hcp, at 393,448 to 393,843
_RS01995
LU632_RS02000: LU632_RS02000 - hypothetical protein, at 394,068 to 394,303
_RS02000
LU632_RS02005: LU632_RS02005 - integrase core domain-containing protein, at 394,375 to 394,591
_RS02005
LU632_RS02010: LU632_RS02010 - IS110 family transposase, at 394,595 to 395,503
_RS02010
Position (kb) 394
395 Strain fitness (log2 ratio) -2
-1
0
1
2 at 393.375 kb on - strand at 393.375 kb on - strand at 393.645 kb on - strand, within LU632_RS01995 at 393.702 kb on - strand, within LU632_RS01995 at 393.838 kb on - strand at 393.962 kb on + strand at 393.988 kb on + strand at 394.047 kb on - strand at 394.214 kb on + strand, within LU632_RS02000 at 394.335 kb on + strand at 394.373 kb on - strand at 394.373 kb on - strand at 394.375 kb on - strand at 394.375 kb on - strand at 394.377 kb on + strand at 394.377 kb on + strand at 394.436 kb on + strand, within LU632_RS02005 at 394.440 kb on + strand, within LU632_RS02005 at 394.440 kb on + strand, within LU632_RS02005 at 394.440 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.475 kb on + strand, within LU632_RS02005 at 394.476 kb on - strand, within LU632_RS02005 at 394.476 kb on - strand, within LU632_RS02005 at 394.477 kb on + strand, within LU632_RS02005 at 394.478 kb on - strand, within LU632_RS02005 at 394.490 kb on + strand, within LU632_RS02005 at 394.490 kb on + strand, within LU632_RS02005 at 394.514 kb on + strand, within LU632_RS02005 at 394.515 kb on - strand, within LU632_RS02005 at 394.517 kb on - strand, within LU632_RS02005 at 394.549 kb on + strand, within LU632_RS02005 at 394.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 393,375 - -1.0 393,375 - -0.6 393,645 - LU632_RS01995 0.50 -1.2 393,702 - LU632_RS01995 0.64 +1.2 393,838 - -0.8 393,962 + +1.1 393,988 + -1.1 394,047 - -0.0 394,214 + LU632_RS02000 0.62 +2.2 394,335 + -1.0 394,373 - -1.6 394,373 - -0.8 394,375 - +0.4 394,375 - -0.3 394,377 + +2.0 394,377 + -0.1 394,436 + LU632_RS02005 0.28 -0.6 394,440 + LU632_RS02005 0.30 +2.2 394,440 + LU632_RS02005 0.30 +1.1 394,440 + LU632_RS02005 0.30 +0.7 394,475 + LU632_RS02005 0.46 +0.5 394,475 + LU632_RS02005 0.46 +1.1 394,475 + LU632_RS02005 0.46 -1.7 394,475 + LU632_RS02005 0.46 +0.8 394,476 - LU632_RS02005 0.47 +1.2 394,476 - LU632_RS02005 0.47 +0.1 394,477 + LU632_RS02005 0.47 +0.3 394,478 - LU632_RS02005 0.47 -0.0 394,490 + LU632_RS02005 0.53 +2.3 394,490 + LU632_RS02005 0.53 -1.9 394,514 + LU632_RS02005 0.64 -0.1 394,515 - LU632_RS02005 0.65 -0.4 394,517 - LU632_RS02005 0.65 -2.2 394,549 + LU632_RS02005 0.80 +0.1 394,597 - -0.4
Or see this region's nucleotide sequence