Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01635

Experiment: plant=Squash; plant sample=QP1; plant location=NA

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01620 and LU632_RS01625 overlap by 4 nucleotidesLU632_RS01625 and LU632_RS01630 are separated by 4 nucleotidesLU632_RS01630 and LU632_RS01635 overlap by 4 nucleotidesLU632_RS01635 and LU632_RS01640 overlap by 4 nucleotidesLU632_RS01640 and LU632_RS01645 overlap by 4 nucleotidesLU632_RS01645 and LU632_RS01650 overlap by 14 nucleotides LU632_RS01620: LU632_RS01620 - lysozyme, at 322,671 to 323,216 _RS01620 LU632_RS01625: LU632_RS01625 - DUF2514 domain-containing protein, at 323,213 to 323,728 _RS01625 LU632_RS01630: LU632_RS01630 - phage tail protein, at 323,733 to 324,194 _RS01630 LU632_RS01635: LU632_RS01635 - phage virion morphogenesis protein, at 324,191 to 324,829 _RS01635 LU632_RS01640: LU632_RS01640 - phage baseplate assembly protein V, at 324,826 to 325,401 _RS01640 LU632_RS01645: LU632_RS01645 - GPW/gp25 family protein, at 325,398 to 325,766 _RS01645 LU632_RS01650: LU632_RS01650 - baseplate J/gp47 family protein, at 325,753 to 326,649 _RS01650 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2 3at 323.239 kb on - strandat 323.283 kb on - strand, within LU632_RS01625at 323.283 kb on - strand, within LU632_RS01625at 323.283 kb on - strand, within LU632_RS01625at 323.283 kb on - strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.284 kb on + strand, within LU632_RS01625at 323.285 kb on - strand, within LU632_RS01625at 323.285 kb on - strand, within LU632_RS01625at 323.285 kb on - strand, within LU632_RS01625at 323.727 kb on - strandat 323.729 kb on + strandat 323.730 kb on - strandat 323.730 kb on - strandat 323.865 kb on + strand, within LU632_RS01630at 323.866 kb on - strand, within LU632_RS01630at 323.874 kb on - strand, within LU632_RS01630at 323.997 kb on - strand, within LU632_RS01630at 324.247 kb on + strandat 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.399 kb on + strand, within LU632_RS01635at 324.400 kb on - strand, within LU632_RS01635at 324.400 kb on - strand, within LU632_RS01635at 324.400 kb on - strand, within LU632_RS01635at 324.493 kb on + strand, within LU632_RS01635at 324.533 kb on + strand, within LU632_RS01635at 324.533 kb on + strand, within LU632_RS01635at 324.534 kb on - strand, within LU632_RS01635at 324.534 kb on - strand, within LU632_RS01635at 324.534 kb on - strand, within LU632_RS01635at 324.657 kb on - strand, within LU632_RS01635at 324.676 kb on + strand, within LU632_RS01635at 324.733 kb on + strand, within LU632_RS01635at 324.738 kb on - strand, within LU632_RS01635at 325.023 kb on + strand, within LU632_RS01640at 325.067 kb on - strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.195 kb on - strand, within LU632_RS01640at 325.413 kb on - strandat 325.586 kb on + strand, within LU632_RS01645at 325.587 kb on - strand, within LU632_RS01645at 325.650 kb on - strand, within LU632_RS01645at 325.650 kb on - strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.653 kb on - strand, within LU632_RS01645at 325.653 kb on - strand, within LU632_RS01645at 325.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA
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323,239 - -1.9
323,283 - LU632_RS01625 0.14 -0.6
323,283 - LU632_RS01625 0.14 +1.1
323,283 - LU632_RS01625 0.14 +0.6
323,283 - LU632_RS01625 0.14 -0.8
323,284 + LU632_RS01625 0.14 -0.6
323,284 + LU632_RS01625 0.14 -0.0
323,284 + LU632_RS01625 0.14 -0.4
323,284 + LU632_RS01625 0.14 +0.8
323,285 - LU632_RS01625 0.14 -2.0
323,285 - LU632_RS01625 0.14 +0.3
323,285 - LU632_RS01625 0.14 -0.8
323,727 - -0.3
323,729 + -0.6
323,730 - -0.5
323,730 - +0.4
323,865 + LU632_RS01630 0.29 -2.6
323,866 - LU632_RS01630 0.29 +2.0
323,874 - LU632_RS01630 0.31 +2.5
323,997 - LU632_RS01630 0.57 +1.0
324,247 + +0.4
324,399 + LU632_RS01635 0.33 -0.9
324,399 + LU632_RS01635 0.33 +0.7
324,399 + LU632_RS01635 0.33 -1.4
324,399 + LU632_RS01635 0.33 +0.4
324,399 + LU632_RS01635 0.33 -0.2
324,399 + LU632_RS01635 0.33 -0.0
324,399 + LU632_RS01635 0.33 +0.4
324,400 - LU632_RS01635 0.33 -0.3
324,400 - LU632_RS01635 0.33 -0.4
324,400 - LU632_RS01635 0.33 -1.7
324,493 + LU632_RS01635 0.47 +1.3
324,533 + LU632_RS01635 0.54 +0.2
324,533 + LU632_RS01635 0.54 -1.3
324,534 - LU632_RS01635 0.54 +2.0
324,534 - LU632_RS01635 0.54 +1.4
324,534 - LU632_RS01635 0.54 -0.7
324,657 - LU632_RS01635 0.73 -0.3
324,676 + LU632_RS01635 0.76 -0.0
324,733 + LU632_RS01635 0.85 +2.0
324,738 - LU632_RS01635 0.86 +3.3
325,023 + LU632_RS01640 0.34 -1.6
325,067 - LU632_RS01640 0.42 -1.6
325,194 + LU632_RS01640 0.64 -0.2
325,194 + LU632_RS01640 0.64 -0.2
325,194 + LU632_RS01640 0.64 -0.0
325,194 + LU632_RS01640 0.64 -0.3
325,195 - LU632_RS01640 0.64 -0.8
325,413 - -0.7
325,586 + LU632_RS01645 0.51 +0.1
325,587 - LU632_RS01645 0.51 +0.3
325,650 - LU632_RS01645 0.68 -0.2
325,650 - LU632_RS01645 0.68 -1.0
325,652 + LU632_RS01645 0.69 -1.1
325,652 + LU632_RS01645 0.69 -0.6
325,652 + LU632_RS01645 0.69 -0.4
325,653 - LU632_RS01645 0.69 -0.7
325,653 - LU632_RS01645 0.69 +1.1
325,795 - -1.0

Or see this region's nucleotide sequence