Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01265 and ulaR are separated by 75 nucleotides ulaR and ulaG are separated by 105 nucleotides ulaG and ulaA are separated by 385 nucleotides
LU632_RS01265: LU632_RS01265 - hypothetical protein, at 264,087 to 264,224
_RS01265
LU632_RS01270: ulaR - HTH-type transcriptional regulator UlaR, at 264,300 to 265,055
ulaR
LU632_RS01275: ulaG - L-ascorbate 6-phosphate lactonase, at 265,161 to 266,225
ulaG
LU632_RS01280: ulaA - PTS ascorbate transporter subunit IIC, at 266,611 to 268,020
ulaA
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 264.253 kb on + strand at 264.255 kb on + strand at 264.268 kb on - strand at 264.268 kb on - strand at 264.354 kb on - strand at 264.354 kb on - strand at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.504 kb on - strand, within ulaR at 264.515 kb on - strand, within ulaR at 264.517 kb on - strand, within ulaR at 264.550 kb on + strand, within ulaR at 264.568 kb on + strand, within ulaR at 264.670 kb on + strand, within ulaR at 264.688 kb on + strand, within ulaR at 264.689 kb on - strand, within ulaR at 264.693 kb on - strand, within ulaR at 264.846 kb on - strand, within ulaR at 264.878 kb on + strand, within ulaR at 264.879 kb on - strand, within ulaR at 264.905 kb on + strand, within ulaR at 264.965 kb on + strand, within ulaR at 264.999 kb on - strand at 264.999 kb on - strand at 264.999 kb on - strand at 265.034 kb on + strand at 265.141 kb on + strand at 265.156 kb on + strand at 265.156 kb on + strand at 265.376 kb on + strand, within ulaG at 265.377 kb on - strand, within ulaG at 265.394 kb on + strand, within ulaG at 265.395 kb on - strand, within ulaG at 265.407 kb on - strand, within ulaG at 265.407 kb on - strand, within ulaG at 265.428 kb on + strand, within ulaG at 265.429 kb on - strand, within ulaG at 265.433 kb on + strand, within ulaG at 265.506 kb on - strand, within ulaG at 265.506 kb on - strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.528 kb on + strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.529 kb on - strand, within ulaG at 265.533 kb on - strand, within ulaG at 265.533 kb on - strand, within ulaG at 265.540 kb on + strand, within ulaG at 265.592 kb on - strand, within ulaG at 265.616 kb on + strand, within ulaG at 265.712 kb on + strand, within ulaG at 265.738 kb on - strand, within ulaG at 265.770 kb on + strand, within ulaG at 266.108 kb on + strand, within ulaG at 266.108 kb on + strand, within ulaG at 266.108 kb on + strand, within ulaG at 266.109 kb on - strand, within ulaG at 266.109 kb on - strand, within ulaG at 266.109 kb on - strand, within ulaG at 266.181 kb on - strand at 266.183 kb on + strand at 266.183 kb on + strand at 266.184 kb on - strand at 266.623 kb on + strand at 266.623 kb on + strand at 266.624 kb on - strand at 266.624 kb on - strand at 266.624 kb on - strand at 266.630 kb on + strand at 266.654 kb on + strand at 266.702 kb on - strand at 266.702 kb on - strand at 266.732 kb on + strand at 266.732 kb on + strand at 266.736 kb on + strand at 266.766 kb on + strand, within ulaA at 266.840 kb on - strand, within ulaA at 266.869 kb on + strand, within ulaA at 266.869 kb on + strand, within ulaA at 266.869 kb on + strand, within ulaA at 266.870 kb on - strand, within ulaA at 266.870 kb on - strand, within ulaA at 266.899 kb on - strand, within ulaA at 266.911 kb on + strand, within ulaA at 266.912 kb on - strand, within ulaA at 266.912 kb on - strand, within ulaA at 266.962 kb on + strand, within ulaA at 266.962 kb on + strand, within ulaA at 267.015 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.018 kb on + strand, within ulaA at 267.019 kb on - strand, within ulaA at 267.019 kb on - strand, within ulaA at 267.019 kb on - strand, within ulaA at 267.135 kb on + strand, within ulaA at 267.136 kb on - strand, within ulaA
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 264,253 + -2.4 264,255 + -1.9 264,268 - -0.4 264,268 - -0.1 264,354 - +2.3 264,354 - +1.9 264,467 - ulaR LU632_RS01270 0.22 -0.9 264,467 - ulaR LU632_RS01270 0.22 -0.9 264,467 - ulaR LU632_RS01270 0.22 +1.9 264,467 - ulaR LU632_RS01270 0.22 -0.4 264,504 - ulaR LU632_RS01270 0.27 +0.4 264,515 - ulaR LU632_RS01270 0.28 -0.4 264,517 - ulaR LU632_RS01270 0.29 +1.4 264,550 + ulaR LU632_RS01270 0.33 +0.4 264,568 + ulaR LU632_RS01270 0.35 +1.9 264,670 + ulaR LU632_RS01270 0.49 +0.1 264,688 + ulaR LU632_RS01270 0.51 +1.7 264,689 - ulaR LU632_RS01270 0.51 +1.4 264,693 - ulaR LU632_RS01270 0.52 -1.6 264,846 - ulaR LU632_RS01270 0.72 +3.9 264,878 + ulaR LU632_RS01270 0.76 +2.7 264,879 - ulaR LU632_RS01270 0.77 +0.2 264,905 + ulaR LU632_RS01270 0.80 +0.9 264,965 + ulaR LU632_RS01270 0.88 +1.9 264,999 - -0.1 264,999 - +1.3 264,999 - -0.9 265,034 + -1.1 265,141 + +0.4 265,156 + +0.6 265,156 + -2.5 265,376 + ulaG LU632_RS01275 0.20 -1.2 265,377 - ulaG LU632_RS01275 0.20 +0.2 265,394 + ulaG LU632_RS01275 0.22 +0.3 265,395 - ulaG LU632_RS01275 0.22 -0.3 265,407 - ulaG LU632_RS01275 0.23 +0.4 265,407 - ulaG LU632_RS01275 0.23 +0.8 265,428 + ulaG LU632_RS01275 0.25 -1.2 265,429 - ulaG LU632_RS01275 0.25 +1.6 265,433 + ulaG LU632_RS01275 0.26 -0.1 265,506 - ulaG LU632_RS01275 0.32 +0.1 265,506 - ulaG LU632_RS01275 0.32 +0.5 265,528 + ulaG LU632_RS01275 0.34 +0.3 265,528 + ulaG LU632_RS01275 0.34 +1.1 265,528 + ulaG LU632_RS01275 0.34 +3.4 265,529 - ulaG LU632_RS01275 0.35 -2.9 265,529 - ulaG LU632_RS01275 0.35 -3.1 265,529 - ulaG LU632_RS01275 0.35 -0.8 265,533 - ulaG LU632_RS01275 0.35 -0.9 265,533 - ulaG LU632_RS01275 0.35 +1.2 265,540 + ulaG LU632_RS01275 0.36 -3.3 265,592 - ulaG LU632_RS01275 0.40 +1.0 265,616 + ulaG LU632_RS01275 0.43 +0.4 265,712 + ulaG LU632_RS01275 0.52 +0.7 265,738 - ulaG LU632_RS01275 0.54 -2.6 265,770 + ulaG LU632_RS01275 0.57 +2.4 266,108 + ulaG LU632_RS01275 0.89 +0.8 266,108 + ulaG LU632_RS01275 0.89 +0.1 266,108 + ulaG LU632_RS01275 0.89 -0.6 266,109 - ulaG LU632_RS01275 0.89 -0.4 266,109 - ulaG LU632_RS01275 0.89 -1.5 266,109 - ulaG LU632_RS01275 0.89 +1.3 266,181 - +0.2 266,183 + -0.4 266,183 + +0.1 266,184 - -0.8 266,623 + -3.0 266,623 + -1.8 266,624 - -1.5 266,624 - +1.5 266,624 - +0.3 266,630 + +0.4 266,654 + +1.3 266,702 - +0.2 266,702 - -1.1 266,732 + -0.1 266,732 + +0.1 266,736 + -0.4 266,766 + ulaA LU632_RS01280 0.11 +0.3 266,840 - ulaA LU632_RS01280 0.16 +0.1 266,869 + ulaA LU632_RS01280 0.18 -1.5 266,869 + ulaA LU632_RS01280 0.18 -2.0 266,869 + ulaA LU632_RS01280 0.18 +4.3 266,870 - ulaA LU632_RS01280 0.18 +0.9 266,870 - ulaA LU632_RS01280 0.18 +2.1 266,899 - ulaA LU632_RS01280 0.20 -1.2 266,911 + ulaA LU632_RS01280 0.21 -1.0 266,912 - ulaA LU632_RS01280 0.21 -1.2 266,912 - ulaA LU632_RS01280 0.21 +0.2 266,962 + ulaA LU632_RS01280 0.25 -1.8 266,962 + ulaA LU632_RS01280 0.25 -0.2 267,015 + ulaA LU632_RS01280 0.29 -1.3 267,018 + ulaA LU632_RS01280 0.29 -0.8 267,018 + ulaA LU632_RS01280 0.29 -0.9 267,018 + ulaA LU632_RS01280 0.29 +0.2 267,018 + ulaA LU632_RS01280 0.29 +1.7 267,018 + ulaA LU632_RS01280 0.29 +1.0 267,018 + ulaA LU632_RS01280 0.29 -0.9 267,018 + ulaA LU632_RS01280 0.29 +0.8 267,019 - ulaA LU632_RS01280 0.29 +0.9 267,019 - ulaA LU632_RS01280 0.29 -0.1 267,019 - ulaA LU632_RS01280 0.29 +1.4 267,135 + ulaA LU632_RS01280 0.37 -0.1 267,136 - ulaA LU632_RS01280 0.37 -1.8
Or see this region's nucleotide sequence