Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS01260 and LU632_RS01265 are separated by 174 nucleotides LU632_RS01265 and ulaR are separated by 75 nucleotides ulaR and ulaG are separated by 105 nucleotides
LU632_RS01260: LU632_RS01260 - MurR/RpiR family transcriptional regulator, at 263,052 to 263,912
_RS01260
LU632_RS01265: LU632_RS01265 - hypothetical protein, at 264,087 to 264,224
_RS01265
LU632_RS01270: ulaR - HTH-type transcriptional regulator UlaR, at 264,300 to 265,055
ulaR
LU632_RS01275: ulaG - L-ascorbate 6-phosphate lactonase, at 265,161 to 266,225
ulaG
Position (kb) 264
265 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 263.294 kb on + strand, within LU632_RS01260 at 263.295 kb on - strand, within LU632_RS01260 at 263.347 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.511 kb on + strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.512 kb on - strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.513 kb on + strand, within LU632_RS01260 at 263.514 kb on - strand, within LU632_RS01260 at 263.601 kb on - strand, within LU632_RS01260 at 263.621 kb on + strand, within LU632_RS01260 at 263.672 kb on + strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.673 kb on - strand, within LU632_RS01260 at 263.677 kb on - strand, within LU632_RS01260 at 263.682 kb on + strand, within LU632_RS01260 at 263.715 kb on - strand, within LU632_RS01260 at 263.735 kb on - strand, within LU632_RS01260 at 263.825 kb on + strand, within LU632_RS01260 at 263.967 kb on + strand at 263.975 kb on + strand at 263.976 kb on - strand at 263.977 kb on + strand at 264.037 kb on - strand at 264.056 kb on - strand at 264.060 kb on - strand at 264.060 kb on - strand at 264.100 kb on - strand at 264.127 kb on - strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.147 kb on + strand, within LU632_RS01265 at 264.253 kb on + strand at 264.255 kb on + strand at 264.268 kb on - strand at 264.268 kb on - strand at 264.354 kb on - strand at 264.354 kb on - strand at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.467 kb on - strand, within ulaR at 264.504 kb on - strand, within ulaR at 264.515 kb on - strand, within ulaR at 264.517 kb on - strand, within ulaR at 264.550 kb on + strand, within ulaR at 264.568 kb on + strand, within ulaR at 264.670 kb on + strand, within ulaR at 264.688 kb on + strand, within ulaR at 264.689 kb on - strand, within ulaR at 264.693 kb on - strand, within ulaR at 264.846 kb on - strand, within ulaR at 264.878 kb on + strand, within ulaR at 264.879 kb on - strand, within ulaR at 264.905 kb on + strand, within ulaR at 264.965 kb on + strand, within ulaR at 264.999 kb on - strand at 264.999 kb on - strand at 264.999 kb on - strand at 265.034 kb on + strand at 265.141 kb on + strand at 265.156 kb on + strand at 265.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 263,294 + LU632_RS01260 0.28 -0.4 263,295 - LU632_RS01260 0.28 -1.4 263,347 + LU632_RS01260 0.34 -0.7 263,511 + LU632_RS01260 0.53 -0.9 263,511 + LU632_RS01260 0.53 -2.2 263,512 - LU632_RS01260 0.53 +3.0 263,512 - LU632_RS01260 0.53 -0.1 263,513 + LU632_RS01260 0.54 -1.0 263,513 + LU632_RS01260 0.54 -1.4 263,514 - LU632_RS01260 0.54 -1.8 263,601 - LU632_RS01260 0.64 -1.6 263,621 + LU632_RS01260 0.66 -0.9 263,672 + LU632_RS01260 0.72 +1.7 263,673 - LU632_RS01260 0.72 -0.7 263,673 - LU632_RS01260 0.72 -0.7 263,673 - LU632_RS01260 0.72 -0.1 263,677 - LU632_RS01260 0.73 -0.7 263,682 + LU632_RS01260 0.73 +1.0 263,715 - LU632_RS01260 0.77 +0.1 263,735 - LU632_RS01260 0.79 -0.8 263,825 + LU632_RS01260 0.90 +0.4 263,967 + -0.6 263,975 + -0.1 263,976 - -0.6 263,977 + +0.1 264,037 - +0.0 264,056 - +1.4 264,060 - -0.8 264,060 - +0.9 264,100 - -0.6 264,127 - LU632_RS01265 0.29 -0.1 264,147 + LU632_RS01265 0.43 -0.9 264,147 + LU632_RS01265 0.43 -1.3 264,253 + -2.4 264,255 + -1.9 264,268 - -0.4 264,268 - -0.1 264,354 - +2.3 264,354 - +1.9 264,467 - ulaR LU632_RS01270 0.22 -0.9 264,467 - ulaR LU632_RS01270 0.22 -0.9 264,467 - ulaR LU632_RS01270 0.22 +1.9 264,467 - ulaR LU632_RS01270 0.22 -0.4 264,504 - ulaR LU632_RS01270 0.27 +0.4 264,515 - ulaR LU632_RS01270 0.28 -0.4 264,517 - ulaR LU632_RS01270 0.29 +1.4 264,550 + ulaR LU632_RS01270 0.33 +0.4 264,568 + ulaR LU632_RS01270 0.35 +1.9 264,670 + ulaR LU632_RS01270 0.49 +0.1 264,688 + ulaR LU632_RS01270 0.51 +1.7 264,689 - ulaR LU632_RS01270 0.51 +1.4 264,693 - ulaR LU632_RS01270 0.52 -1.6 264,846 - ulaR LU632_RS01270 0.72 +3.9 264,878 + ulaR LU632_RS01270 0.76 +2.7 264,879 - ulaR LU632_RS01270 0.77 +0.2 264,905 + ulaR LU632_RS01270 0.80 +0.9 264,965 + ulaR LU632_RS01270 0.88 +1.9 264,999 - -0.1 264,999 - +1.3 264,999 - -0.9 265,034 + -1.1 265,141 + +0.4 265,156 + +0.6 265,156 + -2.5
Or see this region's nucleotide sequence