Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00720 and tssJ are separated by 130 nucleotides tssJ and tssK are separated by 3 nucleotides tssK and tssL overlap by 1 nucleotides
LU632_RS00720: LU632_RS00720 - Hcp family type VI secretion system effector, at 152,437 to 152,922
_RS00720
LU632_RS00725: tssJ - type VI secretion system lipoprotein TssJ, at 153,053 to 153,601
tssJ
LU632_RS00730: tssK - type VI secretion system baseplate subunit TssK, at 153,605 to 154,951
tssK
LU632_RS00735: tssL - type VI secretion system protein TssL, long form, at 154,951 to 156,318
tssL
Position (kb) 153
154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 152.605 kb on - strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.645 kb on + strand, within LU632_RS00720 at 152.651 kb on - strand, within LU632_RS00720 at 152.671 kb on - strand, within LU632_RS00720 at 152.893 kb on + strand at 153.106 kb on - strand at 153.224 kb on - strand, within tssJ at 153.249 kb on + strand, within tssJ at 153.250 kb on - strand, within tssJ at 153.319 kb on + strand, within tssJ at 153.322 kb on + strand, within tssJ at 153.617 kb on - strand at 153.678 kb on - strand at 153.744 kb on - strand, within tssK at 153.750 kb on + strand, within tssK at 153.866 kb on - strand, within tssK at 153.882 kb on + strand, within tssK at 153.882 kb on + strand, within tssK at 153.925 kb on + strand, within tssK at 153.925 kb on + strand, within tssK at 154.027 kb on + strand, within tssK at 154.028 kb on - strand, within tssK at 154.101 kb on + strand, within tssK at 154.146 kb on + strand, within tssK at 154.147 kb on - strand, within tssK at 154.163 kb on + strand, within tssK at 154.164 kb on - strand, within tssK at 154.166 kb on - strand, within tssK at 154.316 kb on + strand, within tssK at 154.317 kb on - strand, within tssK at 154.343 kb on + strand, within tssK at 154.344 kb on - strand, within tssK at 154.344 kb on - strand, within tssK at 154.401 kb on - strand, within tssK at 154.431 kb on + strand, within tssK at 154.441 kb on + strand, within tssK at 154.530 kb on + strand, within tssK at 154.530 kb on + strand, within tssK at 154.539 kb on + strand, within tssK at 154.540 kb on - strand, within tssK at 154.543 kb on + strand, within tssK at 154.543 kb on + strand, within tssK at 154.544 kb on - strand, within tssK at 154.633 kb on - strand, within tssK at 154.777 kb on - strand, within tssK at 154.823 kb on + strand at 154.830 kb on - strand at 154.839 kb on + strand at 154.843 kb on + strand at 154.843 kb on + strand at 154.844 kb on - strand at 155.066 kb on - strand at 155.098 kb on - strand, within tssL at 155.225 kb on + strand, within tssL at 155.378 kb on + strand, within tssL at 155.378 kb on + strand, within tssL at 155.379 kb on - strand, within tssL at 155.382 kb on + strand, within tssL at 155.383 kb on - strand, within tssL at 155.383 kb on - strand, within tssL at 155.390 kb on + strand, within tssL at 155.409 kb on + strand, within tssL at 155.410 kb on - strand, within tssL at 155.533 kb on + strand, within tssL at 155.563 kb on - strand, within tssL at 155.791 kb on + strand, within tssL at 155.847 kb on - strand, within tssL at 155.849 kb on - strand, within tssL at 155.874 kb on + strand, within tssL
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 152,605 - LU632_RS00720 0.35 +1.5 152,645 + LU632_RS00720 0.43 -2.2 152,645 + LU632_RS00720 0.43 +3.3 152,651 - LU632_RS00720 0.44 -0.2 152,671 - LU632_RS00720 0.48 +1.2 152,893 + -0.1 153,106 - -0.5 153,224 - tssJ LU632_RS00725 0.31 +1.3 153,249 + tssJ LU632_RS00725 0.36 -1.0 153,250 - tssJ LU632_RS00725 0.36 +0.2 153,319 + tssJ LU632_RS00725 0.48 +1.4 153,322 + tssJ LU632_RS00725 0.49 +0.7 153,617 - -0.1 153,678 - -0.7 153,744 - tssK LU632_RS00730 0.10 -0.7 153,750 + tssK LU632_RS00730 0.11 +0.1 153,866 - tssK LU632_RS00730 0.19 +0.4 153,882 + tssK LU632_RS00730 0.21 +1.3 153,882 + tssK LU632_RS00730 0.21 -0.2 153,925 + tssK LU632_RS00730 0.24 -0.7 153,925 + tssK LU632_RS00730 0.24 +1.0 154,027 + tssK LU632_RS00730 0.31 -1.1 154,028 - tssK LU632_RS00730 0.31 +2.6 154,101 + tssK LU632_RS00730 0.37 +1.9 154,146 + tssK LU632_RS00730 0.40 +1.9 154,147 - tssK LU632_RS00730 0.40 -0.9 154,163 + tssK LU632_RS00730 0.41 +0.8 154,164 - tssK LU632_RS00730 0.41 -0.8 154,166 - tssK LU632_RS00730 0.42 -0.6 154,316 + tssK LU632_RS00730 0.53 -0.2 154,317 - tssK LU632_RS00730 0.53 +1.9 154,343 + tssK LU632_RS00730 0.55 -0.9 154,344 - tssK LU632_RS00730 0.55 +0.1 154,344 - tssK LU632_RS00730 0.55 +0.4 154,401 - tssK LU632_RS00730 0.59 +4.7 154,431 + tssK LU632_RS00730 0.61 +0.2 154,441 + tssK LU632_RS00730 0.62 +0.1 154,530 + tssK LU632_RS00730 0.69 +0.3 154,530 + tssK LU632_RS00730 0.69 -0.4 154,539 + tssK LU632_RS00730 0.69 -0.1 154,540 - tssK LU632_RS00730 0.69 +1.3 154,543 + tssK LU632_RS00730 0.70 -1.1 154,543 + tssK LU632_RS00730 0.70 -0.9 154,544 - tssK LU632_RS00730 0.70 +0.6 154,633 - tssK LU632_RS00730 0.76 -0.9 154,777 - tssK LU632_RS00730 0.87 +0.2 154,823 + +1.5 154,830 - +2.4 154,839 + -0.9 154,843 + -2.1 154,843 + +0.3 154,844 - -0.5 155,066 - +0.3 155,098 - tssL LU632_RS00735 0.11 -1.6 155,225 + tssL LU632_RS00735 0.20 -1.5 155,378 + tssL LU632_RS00735 0.31 -0.1 155,378 + tssL LU632_RS00735 0.31 -2.9 155,379 - tssL LU632_RS00735 0.31 -0.2 155,382 + tssL LU632_RS00735 0.32 +3.2 155,383 - tssL LU632_RS00735 0.32 +2.4 155,383 - tssL LU632_RS00735 0.32 -0.2 155,390 + tssL LU632_RS00735 0.32 +1.5 155,409 + tssL LU632_RS00735 0.33 +3.1 155,410 - tssL LU632_RS00735 0.34 -0.9 155,533 + tssL LU632_RS00735 0.43 -1.1 155,563 - tssL LU632_RS00735 0.45 -0.2 155,791 + tssL LU632_RS00735 0.61 -1.2 155,847 - tssL LU632_RS00735 0.65 +0.9 155,849 - tssL LU632_RS00735 0.66 +1.6 155,874 + tssL LU632_RS00735 0.67 +3.1
Or see this region's nucleotide sequence