Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00670

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
137,073	-		LU632_RS00665	0.15	+0.3
137,109	-		LU632_RS00665	0.18	-0.1
137,219	-		LU632_RS00665	0.29	-3.9
137,243	+		LU632_RS00665	0.32	-1.6
137,376	+		LU632_RS00665	0.45	+0.2
137,417	-		LU632_RS00665	0.49	+1.4
137,435	+		LU632_RS00665	0.51	-3.0
137,439	+		LU632_RS00665	0.51	+0.0
137,439	+		LU632_RS00665	0.51	-0.4
137,439	+		LU632_RS00665	0.51	+0.9
137,440	-		LU632_RS00665	0.51	-0.4
137,651	-		LU632_RS00665	0.72	+0.1
137,651	-		LU632_RS00665	0.72	+1.6
137,652	+		LU632_RS00665	0.72	-1.0
137,772	-		LU632_RS00665	0.84	+0.0
137,805	-		LU632_RS00665	0.88	-0.3
137,840	+				+0.4
137,840	+				-0.7
137,913	-				-0.1
137,927	+				+0.5
137,927	+				+1.5
137,931	+				+1.8
137,932	-				-0.9
137,975	+				-3.2
138,188	+		LU632_RS00670	0.24	+2.6
138,280	+		LU632_RS00670	0.33	+0.5
138,371	+		LU632_RS00670	0.41	-0.1
138,371	+		LU632_RS00670	0.41	-0.7
138,372	-		LU632_RS00670	0.41	-1.8
138,393	+		LU632_RS00670	0.43	-0.5
138,579	-		LU632_RS00670	0.61	-0.2
138,677	+		LU632_RS00670	0.70	-0.8
138,758	-		LU632_RS00670	0.78	+0.3
138,883	+		LU632_RS00670	0.89	+1.7
138,884	-		LU632_RS00670	0.90	-0.0
138,884	-		LU632_RS00670	0.90	+0.5
138,884	-		LU632_RS00670	0.90	-0.9
138,900	+				-1.2
138,960	+				+1.9
138,960	+				-2.7
138,961	-				-0.1
138,977	+				-1.2
138,978	-				-0.2
139,082	-				+0.1
139,301	+	tssG	LU632_RS00675	0.22	+0.2
139,301	+	tssG	LU632_RS00675	0.22	+0.0
139,302	-	tssG	LU632_RS00675	0.22	-0.1
139,357	+	tssG	LU632_RS00675	0.28	+0.9
139,357	+	tssG	LU632_RS00675	0.28	-1.0
139,358	-	tssG	LU632_RS00675	0.28	-1.0
139,358	-	tssG	LU632_RS00675	0.28	+0.3
139,358	-	tssG	LU632_RS00675	0.28	-1.1
139,403	+	tssG	LU632_RS00675	0.32	+0.6
139,404	-	tssG	LU632_RS00675	0.32	-0.9
139,407	+	tssG	LU632_RS00675	0.33	-0.7
139,408	-	tssG	LU632_RS00675	0.33	-0.9
139,463	+	tssG	LU632_RS00675	0.38	-0.2
139,464	-	tssG	LU632_RS00675	0.38	+2.1
139,494	-	tssG	LU632_RS00675	0.41	+0.5
139,497	-	tssG	LU632_RS00675	0.41	+0.7
139,497	-	tssG	LU632_RS00675	0.41	+3.5
139,585	-	tssG	LU632_RS00675	0.50	-0.4
139,594	+	tssG	LU632_RS00675	0.51	+1.5
139,595	-	tssG	LU632_RS00675	0.51	+0.1
139,631	+	tssG	LU632_RS00675	0.54	-0.9
139,688	+	tssG	LU632_RS00675	0.60	-1.0
139,689	-	tssG	LU632_RS00675	0.60	-1.8
139,689	-	tssG	LU632_RS00675	0.60	-0.2
139,778	+	tssG	LU632_RS00675	0.69	-0.1
139,779	-	tssG	LU632_RS00675	0.69	-0.1
139,840	+	tssG	LU632_RS00675	0.75	+1.9
139,840	+	tssG	LU632_RS00675	0.75	-1.3
139,840	+	tssG	LU632_RS00675	0.75	-1.9
139,847	-	tssG	LU632_RS00675	0.76	-0.7
139,954	+	tssG	LU632_RS00675	0.86	+2.3
139,955	-	tssG	LU632_RS00675	0.86	+0.3