Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00620 and LU632_RS00625 are separated by 22 nucleotides LU632_RS00625 and adhP are separated by 323 nucleotides
LU632_RS00620: LU632_RS00620 - glycoside hydrolase family 88 protein, at 126,554 to 127,693
_RS00620
LU632_RS00625: LU632_RS00625 - MFS transporter, at 127,716 to 129,320
_RS00625
LU632_RS00630: adhP - alcohol dehydrogenase AdhP, at 129,644 to 130,657
adhP
Position (kb) 127
128
129
130 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 126.750 kb on + strand, within LU632_RS00620 at 126.750 kb on + strand, within LU632_RS00620 at 126.751 kb on - strand, within LU632_RS00620 at 126.766 kb on - strand, within LU632_RS00620 at 126.829 kb on - strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 126.997 kb on + strand, within LU632_RS00620 at 127.085 kb on + strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.086 kb on - strand, within LU632_RS00620 at 127.113 kb on + strand, within LU632_RS00620 at 127.131 kb on + strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.132 kb on - strand, within LU632_RS00620 at 127.462 kb on - strand, within LU632_RS00620 at 127.464 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.470 kb on + strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.471 kb on - strand, within LU632_RS00620 at 127.474 kb on + strand, within LU632_RS00620 at 127.475 kb on - strand, within LU632_RS00620 at 127.606 kb on + strand at 127.612 kb on + strand at 127.676 kb on + strand at 127.683 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.685 kb on + strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.686 kb on - strand at 127.702 kb on - strand at 127.827 kb on - strand at 127.983 kb on - strand, within LU632_RS00625 at 127.998 kb on - strand, within LU632_RS00625 at 128.055 kb on - strand, within LU632_RS00625 at 128.168 kb on + strand, within LU632_RS00625 at 128.181 kb on + strand, within LU632_RS00625 at 128.227 kb on - strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.230 kb on + strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.231 kb on - strand, within LU632_RS00625 at 128.236 kb on + strand, within LU632_RS00625 at 128.237 kb on - strand, within LU632_RS00625 at 128.240 kb on + strand, within LU632_RS00625 at 128.241 kb on - strand, within LU632_RS00625 at 128.254 kb on + strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.255 kb on - strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.258 kb on + strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.259 kb on - strand, within LU632_RS00625 at 128.333 kb on - strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.347 kb on + strand, within LU632_RS00625 at 128.374 kb on - strand, within LU632_RS00625 at 128.414 kb on + strand, within LU632_RS00625 at 128.415 kb on - strand, within LU632_RS00625 at 128.451 kb on + strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.452 kb on - strand, within LU632_RS00625 at 128.505 kb on + strand, within LU632_RS00625 at 128.506 kb on - strand, within LU632_RS00625 at 128.511 kb on + strand, within LU632_RS00625 at 128.519 kb on - strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.521 kb on + strand, within LU632_RS00625 at 128.522 kb on - strand, within LU632_RS00625 at 128.526 kb on - strand, within LU632_RS00625 at 128.556 kb on - strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.557 kb on + strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.558 kb on - strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.569 kb on + strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.570 kb on - strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.600 kb on + strand, within LU632_RS00625 at 128.601 kb on - strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.604 kb on + strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.605 kb on - strand, within LU632_RS00625 at 128.627 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.637 kb on + strand, within LU632_RS00625 at 128.638 kb on - strand, within LU632_RS00625 at 128.752 kb on - strand, within LU632_RS00625 at 128.752 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.754 kb on - strand, within LU632_RS00625 at 128.809 kb on + strand, within LU632_RS00625 at 128.925 kb on + strand, within LU632_RS00625 at 128.926 kb on - strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.977 kb on + strand, within LU632_RS00625 at 128.978 kb on - strand, within LU632_RS00625 at 128.989 kb on + strand, within LU632_RS00625 at 128.990 kb on - strand, within LU632_RS00625 at 128.992 kb on + strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.993 kb on - strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.998 kb on + strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 128.999 kb on - strand, within LU632_RS00625 at 129.006 kb on - strand, within LU632_RS00625 at 129.008 kb on + strand, within LU632_RS00625 at 129.028 kb on + strand, within LU632_RS00625 at 129.032 kb on + strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.033 kb on - strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.036 kb on + strand, within LU632_RS00625 at 129.121 kb on + strand, within LU632_RS00625 at 129.214 kb on + strand at 129.290 kb on - strand at 129.309 kb on - strand at 129.320 kb on + strand at 129.336 kb on + strand at 129.345 kb on + strand at 129.346 kb on - strand at 129.360 kb on - strand at 129.383 kb on - strand at 129.383 kb on - strand at 129.604 kb on + strand at 129.604 kb on + strand at 129.605 kb on - strand at 129.605 kb on - strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.617 kb on + strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.618 kb on - strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.619 kb on + strand at 129.620 kb on - strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.621 kb on + strand at 129.806 kb on - strand, within adhP at 129.807 kb on + strand, within adhP at 129.948 kb on + strand, within adhP at 130.006 kb on + strand, within adhP at 130.007 kb on - strand, within adhP at 130.095 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.146 kb on - strand, within adhP at 130.165 kb on + strand, within adhP at 130.181 kb on + strand, within adhP at 130.225 kb on + strand, within adhP at 130.226 kb on - strand, within adhP at 130.226 kb on - strand, within adhP at 130.275 kb on + strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 126,750 + LU632_RS00620 0.17 -1.8 126,750 + LU632_RS00620 0.17 -2.4 126,751 - LU632_RS00620 0.17 -0.2 126,766 - LU632_RS00620 0.19 +1.2 126,829 - LU632_RS00620 0.24 -0.5 126,997 + LU632_RS00620 0.39 -1.7 126,997 + LU632_RS00620 0.39 +1.1 127,085 + LU632_RS00620 0.47 +1.2 127,086 - LU632_RS00620 0.47 -1.1 127,086 - LU632_RS00620 0.47 -1.7 127,113 + LU632_RS00620 0.49 +1.2 127,131 + LU632_RS00620 0.51 +3.5 127,132 - LU632_RS00620 0.51 +0.3 127,132 - LU632_RS00620 0.51 -0.4 127,462 - LU632_RS00620 0.80 -0.2 127,464 + LU632_RS00620 0.80 -0.1 127,470 + LU632_RS00620 0.80 -0.0 127,470 + LU632_RS00620 0.80 +0.9 127,470 + LU632_RS00620 0.80 -0.1 127,470 + LU632_RS00620 0.80 -1.7 127,470 + LU632_RS00620 0.80 +0.7 127,470 + LU632_RS00620 0.80 -0.6 127,471 - LU632_RS00620 0.80 -0.9 127,471 - LU632_RS00620 0.80 +0.6 127,474 + LU632_RS00620 0.81 -1.7 127,475 - LU632_RS00620 0.81 +2.8 127,606 + +3.1 127,612 + +0.2 127,676 + -0.6 127,683 + -2.1 127,685 + +1.7 127,685 + -1.5 127,685 + -1.1 127,686 - +1.0 127,686 - +1.5 127,686 - +0.9 127,702 - +0.3 127,827 - -1.8 127,983 - LU632_RS00625 0.17 -2.9 127,998 - LU632_RS00625 0.18 +2.7 128,055 - LU632_RS00625 0.21 -0.5 128,168 + LU632_RS00625 0.28 +0.1 128,181 + LU632_RS00625 0.29 -0.7 128,227 - LU632_RS00625 0.32 -1.2 128,230 + LU632_RS00625 0.32 -0.4 128,230 + LU632_RS00625 0.32 +0.3 128,230 + LU632_RS00625 0.32 +0.1 128,230 + LU632_RS00625 0.32 +0.3 128,230 + LU632_RS00625 0.32 -2.0 128,230 + LU632_RS00625 0.32 -0.9 128,230 + LU632_RS00625 0.32 -2.2 128,230 + LU632_RS00625 0.32 +0.8 128,231 - LU632_RS00625 0.32 +0.5 128,231 - LU632_RS00625 0.32 -1.5 128,231 - LU632_RS00625 0.32 -0.9 128,231 - LU632_RS00625 0.32 +0.9 128,231 - LU632_RS00625 0.32 +1.5 128,236 + LU632_RS00625 0.32 +1.7 128,237 - LU632_RS00625 0.32 +1.2 128,240 + LU632_RS00625 0.33 +1.3 128,241 - LU632_RS00625 0.33 +0.8 128,254 + LU632_RS00625 0.34 +0.7 128,255 - LU632_RS00625 0.34 +0.0 128,255 - LU632_RS00625 0.34 +2.4 128,255 - LU632_RS00625 0.34 -2.1 128,255 - LU632_RS00625 0.34 -0.4 128,258 + LU632_RS00625 0.34 +1.7 128,258 + LU632_RS00625 0.34 -1.3 128,259 - LU632_RS00625 0.34 +0.2 128,259 - LU632_RS00625 0.34 +2.9 128,259 - LU632_RS00625 0.34 +1.0 128,333 - LU632_RS00625 0.38 -0.4 128,347 + LU632_RS00625 0.39 -1.8 128,347 + LU632_RS00625 0.39 -1.4 128,374 - LU632_RS00625 0.41 +0.1 128,414 + LU632_RS00625 0.43 -0.1 128,415 - LU632_RS00625 0.44 +4.6 128,451 + LU632_RS00625 0.46 -0.3 128,452 - LU632_RS00625 0.46 +0.3 128,452 - LU632_RS00625 0.46 -0.7 128,505 + LU632_RS00625 0.49 -0.1 128,506 - LU632_RS00625 0.49 -0.6 128,511 + LU632_RS00625 0.50 +0.9 128,519 - LU632_RS00625 0.50 -0.9 128,521 + LU632_RS00625 0.50 +0.1 128,521 + LU632_RS00625 0.50 +1.5 128,522 - LU632_RS00625 0.50 +1.4 128,526 - LU632_RS00625 0.50 -0.4 128,556 - LU632_RS00625 0.52 +0.8 128,557 + LU632_RS00625 0.52 +1.9 128,557 + LU632_RS00625 0.52 -0.9 128,557 + LU632_RS00625 0.52 +1.6 128,557 + LU632_RS00625 0.52 -0.1 128,558 - LU632_RS00625 0.52 -1.4 128,558 - LU632_RS00625 0.52 -2.0 128,569 + LU632_RS00625 0.53 -0.1 128,569 + LU632_RS00625 0.53 +1.2 128,570 - LU632_RS00625 0.53 -0.7 128,570 - LU632_RS00625 0.53 -2.0 128,600 + LU632_RS00625 0.55 -0.7 128,600 + LU632_RS00625 0.55 -0.5 128,601 - LU632_RS00625 0.55 -1.6 128,604 + LU632_RS00625 0.55 -0.5 128,604 + LU632_RS00625 0.55 -0.9 128,604 + LU632_RS00625 0.55 +2.0 128,605 - LU632_RS00625 0.55 +0.3 128,605 - LU632_RS00625 0.55 -0.7 128,627 + LU632_RS00625 0.57 -1.6 128,637 + LU632_RS00625 0.57 -0.1 128,637 + LU632_RS00625 0.57 +2.8 128,638 - LU632_RS00625 0.57 -0.0 128,752 - LU632_RS00625 0.65 +0.9 128,752 - LU632_RS00625 0.65 -1.2 128,754 - LU632_RS00625 0.65 +0.1 128,754 - LU632_RS00625 0.65 -0.3 128,809 + LU632_RS00625 0.68 -0.4 128,925 + LU632_RS00625 0.75 -0.9 128,926 - LU632_RS00625 0.75 +2.0 128,977 + LU632_RS00625 0.79 +0.0 128,977 + LU632_RS00625 0.79 -1.1 128,978 - LU632_RS00625 0.79 +1.2 128,989 + LU632_RS00625 0.79 -0.5 128,990 - LU632_RS00625 0.79 +0.3 128,992 + LU632_RS00625 0.80 +0.0 128,993 - LU632_RS00625 0.80 +0.3 128,993 - LU632_RS00625 0.80 +0.8 128,993 - LU632_RS00625 0.80 -0.9 128,998 + LU632_RS00625 0.80 -1.7 128,998 + LU632_RS00625 0.80 +0.9 128,998 + LU632_RS00625 0.80 -0.1 128,998 + LU632_RS00625 0.80 -1.7 128,998 + LU632_RS00625 0.80 -1.0 128,999 - LU632_RS00625 0.80 -2.4 128,999 - LU632_RS00625 0.80 +1.1 128,999 - LU632_RS00625 0.80 -1.2 128,999 - LU632_RS00625 0.80 -0.1 129,006 - LU632_RS00625 0.80 +0.5 129,008 + LU632_RS00625 0.80 -0.2 129,028 + LU632_RS00625 0.82 -0.9 129,032 + LU632_RS00625 0.82 +0.3 129,033 - LU632_RS00625 0.82 -0.0 129,033 - LU632_RS00625 0.82 -0.9 129,036 + LU632_RS00625 0.82 -1.5 129,036 + LU632_RS00625 0.82 -1.1 129,121 + LU632_RS00625 0.88 +0.9 129,214 + -0.7 129,290 - -0.7 129,309 - +1.1 129,320 + -1.3 129,336 + -0.1 129,345 + -1.8 129,346 - -2.9 129,360 - -0.4 129,383 - +0.1 129,383 - -0.7 129,604 + +0.2 129,604 + -0.8 129,605 - +0.5 129,605 - +0.7 129,617 + -0.9 129,617 + +0.1 129,617 + -0.2 129,618 - +1.2 129,618 - +0.9 129,618 - +1.2 129,619 + +0.6 129,619 + -1.0 129,619 + -0.1 129,619 + -0.7 129,620 - -2.6 129,621 + +1.9 129,621 + -1.2 129,621 + -0.1 129,621 + +0.8 129,621 + -0.7 129,806 - adhP LU632_RS00630 0.16 -0.7 129,807 + adhP LU632_RS00630 0.16 -1.7 129,948 + adhP LU632_RS00630 0.30 -0.6 130,006 + adhP LU632_RS00630 0.36 -0.4 130,007 - adhP LU632_RS00630 0.36 +0.1 130,095 - adhP LU632_RS00630 0.44 +0.9 130,146 - adhP LU632_RS00630 0.50 +0.1 130,146 - adhP LU632_RS00630 0.50 -1.8 130,165 + adhP LU632_RS00630 0.51 +1.2 130,181 + adhP LU632_RS00630 0.53 -1.1 130,225 + adhP LU632_RS00630 0.57 +1.7 130,226 - adhP LU632_RS00630 0.57 -0.7 130,226 - adhP LU632_RS00630 0.57 -1.4 130,275 + adhP LU632_RS00630 0.62 -3.4
Or see this region's nucleotide sequence