Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00580

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
119,421	+	mntP	LU632_RS00575	0.34	-0.1
119,421	+	mntP	LU632_RS00575	0.34	+0.5
119,422	-	mntP	LU632_RS00575	0.34	-0.9
119,422	-	mntP	LU632_RS00575	0.34	-1.8
119,453	+	mntP	LU632_RS00575	0.39	-0.6
119,454	-	mntP	LU632_RS00575	0.40	-1.7
119,624	+	mntP	LU632_RS00575	0.70	+2.3
119,624	+	mntP	LU632_RS00575	0.70	+2.8
119,845	-				+1.0
120,029	+				-0.6
120,029	+				-1.0
120,103	-				-0.0
120,117	+				-1.9
120,117	+				-0.8
120,135	+				-0.1
120,258	-				-0.1
120,267	+				-0.9
120,269	+				-1.9
120,270	-				-0.1
120,270	-				-1.1
120,370	+		LU632_RS00580	0.12	-0.7
120,371	-		LU632_RS00580	0.12	-1.4
120,381	+		LU632_RS00580	0.14	+0.5
120,382	-		LU632_RS00580	0.14	-1.7
120,417	+		LU632_RS00580	0.18	+0.0
120,466	+		LU632_RS00580	0.25	+0.5
120,466	+		LU632_RS00580	0.25	-0.7
120,466	+		LU632_RS00580	0.25	+0.6
120,467	-		LU632_RS00580	0.25	+1.9
120,467	-		LU632_RS00580	0.25	-0.7
120,467	-		LU632_RS00580	0.25	-1.1
120,467	-		LU632_RS00580	0.25	-0.8
120,501	-		LU632_RS00580	0.30	-2.2
120,612	-		LU632_RS00580	0.45	-0.7
120,614	+		LU632_RS00580	0.45	-2.9
120,615	-		LU632_RS00580	0.45	+0.2
120,615	-		LU632_RS00580	0.45	+0.2
120,632	+		LU632_RS00580	0.48	-0.1
120,635	+		LU632_RS00580	0.48	-0.1
120,635	+		LU632_RS00580	0.48	+1.7
120,732	+		LU632_RS00580	0.61	+1.0
120,732	+		LU632_RS00580	0.61	-0.2
120,732	+		LU632_RS00580	0.61	+0.6
120,732	+		LU632_RS00580	0.61	-0.7
120,732	+		LU632_RS00580	0.61	-1.1
120,732	+		LU632_RS00580	0.61	+0.3
120,732	+		LU632_RS00580	0.61	-0.5
120,733	-		LU632_RS00580	0.62	-1.4
120,735	-		LU632_RS00580	0.62	-1.2
120,735	-		LU632_RS00580	0.62	-1.7
120,857	+		LU632_RS00580	0.79	-1.3
121,089	+				-3.7
121,135	-				-0.8
121,178	-				+0.8
121,214	+				-0.2
121,282	-	cbpA	LU632_RS00585	0.17	+0.6
121,317	+	cbpA	LU632_RS00585	0.20	+0.9
121,318	-	cbpA	LU632_RS00585	0.21	-1.5
121,327	+	cbpA	LU632_RS00585	0.21	-0.4
121,374	+	cbpA	LU632_RS00585	0.26	-1.9
121,539	-	cbpA	LU632_RS00585	0.44	-1.2
121,719	+	cbpA	LU632_RS00585	0.63	+0.7
121,723	+	cbpA	LU632_RS00585	0.64	-1.0
121,819	-	cbpA	LU632_RS00585	0.74	-1.3
121,819	-	cbpA	LU632_RS00585	0.74	+2.0
121,819	-	cbpA	LU632_RS00585	0.74	+0.6
121,866	-	cbpA	LU632_RS00585	0.79	-0.4
121,869	+	cbpA	LU632_RS00585	0.79	-0.5
121,941	+	cbpA	LU632_RS00585	0.87	+1.9
121,942	-	cbpA	LU632_RS00585	0.87	-0.4
121,953	+	cbpA	LU632_RS00585	0.88	+0.7
121,953	+	cbpA	LU632_RS00585	0.88	+0.7
121,954	-	cbpA	LU632_RS00585	0.88	-0.1
121,954	-	cbpA	LU632_RS00585	0.88	+0.2
121,984	-				+0.5