Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS00530

Experiment: plant=Squash; plant sample=QP1; plant location=NA

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=QP1; plant location=NA
108,529	+		LU632_RS00525	0.74	+0.2
108,549	+		LU632_RS00525	0.76	-1.2
108,702	-		LU632_RS00525	0.89	+0.3
108,741	-				+1.1
108,750	-				+0.1
108,912	+				+0.1
109,312	+				+0.6
109,886	+		LU632_RS00530	0.11	-0.7
109,892	+		LU632_RS00530	0.11	-1.8
109,977	-		LU632_RS00530	0.13	+0.5
110,112	-		LU632_RS00530	0.17	+0.9
110,170	-		LU632_RS00530	0.18	+0.1
110,310	-		LU632_RS00530	0.22	+3.6
110,367	+		LU632_RS00530	0.24	+0.6
110,367	+		LU632_RS00530	0.24	+0.7
110,367	+		LU632_RS00530	0.24	+0.4
110,372	-		LU632_RS00530	0.24	-0.6
110,410	+		LU632_RS00530	0.25	+0.3
110,410	+		LU632_RS00530	0.25	+1.0
110,502	-		LU632_RS00530	0.27	+1.6
110,593	+		LU632_RS00530	0.30	-2.2
110,605	+		LU632_RS00530	0.30	-0.7
110,605	+		LU632_RS00530	0.30	+1.0
110,606	-		LU632_RS00530	0.30	+1.1
110,628	-		LU632_RS00530	0.31	-0.2
110,643	-		LU632_RS00530	0.31	-0.4
110,648	+		LU632_RS00530	0.31	-0.6
110,649	-		LU632_RS00530	0.31	-1.4
110,718	+		LU632_RS00530	0.33	-0.4
110,966	+		LU632_RS00530	0.40	-2.4
110,967	-		LU632_RS00530	0.40	-1.8
110,967	-		LU632_RS00530	0.40	+1.7
110,967	-		LU632_RS00530	0.40	+1.9
110,967	-		LU632_RS00530	0.40	+2.2
110,972	+		LU632_RS00530	0.40	+1.3
110,972	+		LU632_RS00530	0.40	-1.5
110,972	+		LU632_RS00530	0.40	-0.6
110,973	-		LU632_RS00530	0.40	-0.5
111,020	+		LU632_RS00530	0.41	-1.5
111,021	-		LU632_RS00530	0.41	-0.9
111,147	-		LU632_RS00530	0.45	+1.5
111,218	+		LU632_RS00530	0.47	-1.8
111,269	+		LU632_RS00530	0.48	-1.7
111,269	+		LU632_RS00530	0.48	-0.8
111,270	-		LU632_RS00530	0.48	+1.0
111,270	-		LU632_RS00530	0.48	+1.2
112,975	+				+0.0
112,976	-				-0.4
112,976	-				-1.4
113,105	-				-1.2
113,124	-				-0.8
113,168	+				-1.8
113,169	-				-1.5
113,169	-				-0.2
113,209	-				+0.0
113,245	+				-0.7
113,246	-				-0.4
113,246	-				-1.0
113,247	+				+1.3
113,247	+				+0.1
113,248	-				+2.4
113,248	-				-0.9
113,248	-				+0.7
113,248	-				-0.6
113,293	-		LU632_RS00535	0.17	-1.4
113,340	-		LU632_RS00535	0.34	-2.9
113,414	-		LU632_RS00535	0.61	-0.8
113,470	-		LU632_RS00535	0.82	-1.8
113,516	-				-0.1
113,525	+				+1.1
113,525	+				-0.5
113,526	-				-1.5
113,604	+				+1.2
113,605	-				-1.5
113,612	-				-0.7
113,677	-				+0.3