Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00290 and LU632_RS00295 are separated by 31 nucleotides LU632_RS00295 and LU632_RS00300 are separated by 218 nucleotides
LU632_RS00290: LU632_RS00290 - hypothetical protein, at 58,592 to 59,620
_RS00290
LU632_RS00295: LU632_RS00295 - IS1 family transposase, at 59,652 to 60,349
_RS00295
LU632_RS00300: LU632_RS00300 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 60,568 to 61,599
_RS00300
Position (kb) 59
60
61 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.002 kb on - strand, within LU632_RS00290 at 59.131 kb on - strand, within LU632_RS00290 at 59.160 kb on + strand, within LU632_RS00290 at 59.166 kb on - strand, within LU632_RS00290 at 59.250 kb on - strand, within LU632_RS00290 at 59.293 kb on + strand, within LU632_RS00290 at 59.356 kb on - strand, within LU632_RS00290 at 59.540 kb on + strand at 59.540 kb on + strand at 59.563 kb on + strand at 59.570 kb on - strand at 59.582 kb on - strand at 60.380 kb on + strand at 60.381 kb on - strand at 60.383 kb on + strand at 60.383 kb on + strand at 60.384 kb on - strand at 60.387 kb on + strand at 60.405 kb on - strand at 60.428 kb on + strand at 60.428 kb on + strand at 60.428 kb on + strand at 60.432 kb on - strand at 60.432 kb on - strand at 60.470 kb on - strand at 60.470 kb on - strand at 60.499 kb on - strand at 60.519 kb on - strand at 60.735 kb on - strand, within LU632_RS00300 at 60.735 kb on - strand, within LU632_RS00300 at 60.735 kb on - strand, within LU632_RS00300 at 60.748 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.889 kb on + strand, within LU632_RS00300 at 60.890 kb on - strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 60.918 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.025 kb on + strand, within LU632_RS00300 at 61.026 kb on - strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.181 kb on + strand, within LU632_RS00300 at 61.183 kb on + strand, within LU632_RS00300 at 61.184 kb on - strand, within LU632_RS00300 at 61.243 kb on - strand, within LU632_RS00300 at 61.274 kb on + strand, within LU632_RS00300 at 61.275 kb on - strand, within LU632_RS00300 at 61.277 kb on - strand, within LU632_RS00300 at 61.284 kb on + strand, within LU632_RS00300
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 59,002 - LU632_RS00290 0.40 +0.0 59,131 - LU632_RS00290 0.52 -0.8 59,160 + LU632_RS00290 0.55 +0.8 59,166 - LU632_RS00290 0.56 +0.4 59,250 - LU632_RS00290 0.64 -1.1 59,293 + LU632_RS00290 0.68 -1.9 59,356 - LU632_RS00290 0.74 -2.1 59,540 + +0.6 59,540 + +0.1 59,563 + +1.3 59,570 - +1.4 59,582 - -2.1 60,380 + +0.2 60,381 - -0.5 60,383 + -0.4 60,383 + -0.6 60,384 - -0.2 60,387 + -0.3 60,405 - +0.6 60,428 + -0.1 60,428 + +0.7 60,428 + -1.0 60,432 - -0.9 60,432 - -1.3 60,470 - -0.0 60,470 - +2.5 60,499 - -1.4 60,519 - +1.1 60,735 - LU632_RS00300 0.16 -0.7 60,735 - LU632_RS00300 0.16 +1.8 60,735 - LU632_RS00300 0.16 +0.2 60,748 + LU632_RS00300 0.17 +2.4 60,889 + LU632_RS00300 0.31 +0.1 60,889 + LU632_RS00300 0.31 -0.7 60,889 + LU632_RS00300 0.31 +0.5 60,889 + LU632_RS00300 0.31 +0.6 60,889 + LU632_RS00300 0.31 -0.2 60,890 - LU632_RS00300 0.31 +1.1 60,918 + LU632_RS00300 0.34 +1.4 60,918 + LU632_RS00300 0.34 -0.5 61,025 + LU632_RS00300 0.44 +0.1 61,025 + LU632_RS00300 0.44 +0.0 61,025 + LU632_RS00300 0.44 -1.7 61,025 + LU632_RS00300 0.44 +0.5 61,025 + LU632_RS00300 0.44 +1.6 61,026 - LU632_RS00300 0.44 -0.3 61,181 + LU632_RS00300 0.59 -0.1 61,181 + LU632_RS00300 0.59 -1.0 61,181 + LU632_RS00300 0.59 -1.8 61,183 + LU632_RS00300 0.60 +0.6 61,184 - LU632_RS00300 0.60 +1.5 61,243 - LU632_RS00300 0.65 -0.4 61,274 + LU632_RS00300 0.68 -0.5 61,275 - LU632_RS00300 0.69 -0.5 61,277 - LU632_RS00300 0.69 +0.2 61,284 + LU632_RS00300 0.69 -0.1
Or see this region's nucleotide sequence