Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS00265 and dppB are separated by 212 nucleotides dppB and dppC are separated by 10 nucleotides dppC and dppD are separated by 9 nucleotides
LU632_RS00265: LU632_RS00265 - ABC transporter substrate-binding protein, at 52,705 to 54,315
_RS00265
LU632_RS00270: dppB - dipeptide ABC transporter permease DppB, at 54,528 to 55,547
dppB
LU632_RS00275: dppC - dipeptide ABC transporter permease DppC, at 55,558 to 56,460
dppC
LU632_RS00280: dppD - dipeptide ABC transporter ATP-binding protein, at 56,470 to 57,456
dppD
Position (kb) 54
55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 53.541 kb on + strand, within LU632_RS00265 at 53.542 kb on - strand, within LU632_RS00265 at 53.599 kb on - strand, within LU632_RS00265 at 53.684 kb on - strand, within LU632_RS00265 at 53.724 kb on + strand, within LU632_RS00265 at 53.738 kb on - strand, within LU632_RS00265 at 53.740 kb on - strand, within LU632_RS00265 at 53.764 kb on + strand, within LU632_RS00265 at 53.821 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.858 kb on - strand, within LU632_RS00265 at 53.877 kb on + strand, within LU632_RS00265 at 53.938 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.079 kb on + strand, within LU632_RS00265 at 54.094 kb on + strand, within LU632_RS00265 at 54.095 kb on - strand, within LU632_RS00265 at 54.160 kb on + strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.161 kb on - strand at 54.163 kb on + strand at 54.163 kb on + strand at 54.164 kb on - strand at 54.164 kb on - strand at 54.207 kb on - strand at 54.279 kb on + strand at 54.279 kb on + strand at 54.306 kb on + strand at 54.314 kb on - strand at 54.479 kb on + strand at 54.480 kb on - strand at 54.527 kb on + strand at 54.527 kb on + strand at 54.541 kb on + strand at 54.542 kb on - strand at 54.576 kb on - strand at 54.582 kb on - strand at 54.589 kb on + strand at 54.589 kb on + strand at 54.611 kb on + strand at 54.723 kb on + strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.724 kb on - strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.725 kb on + strand, within dppB at 54.726 kb on - strand, within dppB at 54.726 kb on - strand, within dppB at 54.764 kb on + strand, within dppB at 54.765 kb on - strand, within dppB at 54.816 kb on - strand, within dppB at 54.932 kb on + strand, within dppB at 54.987 kb on - strand, within dppB at 54.987 kb on - strand, within dppB at 55.046 kb on - strand, within dppB at 55.092 kb on - strand, within dppB at 55.233 kb on + strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.234 kb on - strand, within dppB at 55.235 kb on + strand, within dppB at 55.236 kb on - strand, within dppB at 55.236 kb on - strand, within dppB at 55.298 kb on + strand, within dppB at 55.298 kb on + strand, within dppB at 55.445 kb on - strand, within dppB at 55.445 kb on - strand, within dppB at 55.479 kb on - strand at 55.509 kb on + strand at 55.630 kb on + strand at 55.631 kb on - strand at 55.644 kb on + strand at 55.670 kb on - strand, within dppC at 55.751 kb on + strand, within dppC at 55.795 kb on - strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.843 kb on + strand, within dppC at 55.844 kb on - strand, within dppC at 56.001 kb on - strand, within dppC at 56.040 kb on + strand, within dppC at 56.041 kb on - strand, within dppC at 56.041 kb on - strand, within dppC at 56.083 kb on + strand, within dppC at 56.083 kb on + strand, within dppC at 56.131 kb on + strand, within dppC at 56.131 kb on + strand, within dppC at 56.427 kb on - strand at 56.480 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 53,541 + LU632_RS00265 0.52 +0.2 53,542 - LU632_RS00265 0.52 +1.3 53,599 - LU632_RS00265 0.55 +1.3 53,684 - LU632_RS00265 0.61 -0.2 53,724 + LU632_RS00265 0.63 -2.8 53,738 - LU632_RS00265 0.64 -0.8 53,740 - LU632_RS00265 0.64 -1.5 53,764 + LU632_RS00265 0.66 -3.4 53,821 - LU632_RS00265 0.69 -1.7 53,858 - LU632_RS00265 0.72 +1.4 53,858 - LU632_RS00265 0.72 +1.3 53,858 - LU632_RS00265 0.72 -0.1 53,877 + LU632_RS00265 0.73 +0.1 53,938 + LU632_RS00265 0.77 +0.8 54,079 + LU632_RS00265 0.85 -0.7 54,079 + LU632_RS00265 0.85 -0.1 54,094 + LU632_RS00265 0.86 +0.4 54,095 - LU632_RS00265 0.86 -0.9 54,160 + +0.3 54,161 - +2.5 54,161 - -1.1 54,161 - +0.3 54,163 + -1.4 54,163 + -1.1 54,164 - +2.9 54,164 - -0.9 54,207 - -0.5 54,279 + -0.4 54,279 + -0.9 54,306 + -1.6 54,314 - -1.7 54,479 + -0.5 54,480 - -0.4 54,527 + +0.9 54,527 + +0.6 54,541 + +0.4 54,542 - +2.8 54,576 - +3.4 54,582 - +0.7 54,589 + -0.1 54,589 + -2.4 54,611 + -2.6 54,723 + dppB LU632_RS00270 0.19 -0.2 54,724 - dppB LU632_RS00270 0.19 +0.3 54,724 - dppB LU632_RS00270 0.19 -2.4 54,724 - dppB LU632_RS00270 0.19 +1.6 54,725 + dppB LU632_RS00270 0.19 +0.0 54,725 + dppB LU632_RS00270 0.19 +0.1 54,725 + dppB LU632_RS00270 0.19 +3.2 54,725 + dppB LU632_RS00270 0.19 +0.0 54,726 - dppB LU632_RS00270 0.19 -0.8 54,726 - dppB LU632_RS00270 0.19 -0.1 54,764 + dppB LU632_RS00270 0.23 +1.1 54,765 - dppB LU632_RS00270 0.23 -1.1 54,816 - dppB LU632_RS00270 0.28 -0.7 54,932 + dppB LU632_RS00270 0.40 +0.3 54,987 - dppB LU632_RS00270 0.45 -1.0 54,987 - dppB LU632_RS00270 0.45 -1.4 55,046 - dppB LU632_RS00270 0.51 +1.3 55,092 - dppB LU632_RS00270 0.55 -0.7 55,233 + dppB LU632_RS00270 0.69 +2.3 55,234 - dppB LU632_RS00270 0.69 +0.3 55,234 - dppB LU632_RS00270 0.69 +0.6 55,234 - dppB LU632_RS00270 0.69 -0.0 55,235 + dppB LU632_RS00270 0.69 -0.9 55,236 - dppB LU632_RS00270 0.69 -0.1 55,236 - dppB LU632_RS00270 0.69 +0.1 55,298 + dppB LU632_RS00270 0.75 -0.1 55,298 + dppB LU632_RS00270 0.75 -2.2 55,445 - dppB LU632_RS00270 0.90 -1.2 55,445 - dppB LU632_RS00270 0.90 -0.9 55,479 - +0.3 55,509 + -0.1 55,630 + -0.3 55,631 - +0.9 55,644 + -1.1 55,670 - dppC LU632_RS00275 0.12 +0.1 55,751 + dppC LU632_RS00275 0.21 +0.1 55,795 - dppC LU632_RS00275 0.26 -1.2 55,843 + dppC LU632_RS00275 0.32 -1.7 55,843 + dppC LU632_RS00275 0.32 -0.4 55,843 + dppC LU632_RS00275 0.32 +0.0 55,843 + dppC LU632_RS00275 0.32 +0.9 55,844 - dppC LU632_RS00275 0.32 +4.8 56,001 - dppC LU632_RS00275 0.49 +0.3 56,040 + dppC LU632_RS00275 0.53 +0.8 56,041 - dppC LU632_RS00275 0.53 -1.2 56,041 - dppC LU632_RS00275 0.53 -2.4 56,083 + dppC LU632_RS00275 0.58 -0.4 56,083 + dppC LU632_RS00275 0.58 -0.9 56,131 + dppC LU632_RS00275 0.63 +0.8 56,131 + dppC LU632_RS00275 0.63 -1.4 56,427 - -0.4 56,480 + +0.7
Or see this region's nucleotide sequence