Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glyS and glyQ are separated by 9 nucleotides glyQ and LU632_RS00195 are separated by 197 nucleotides
LU632_RS00185: glyS - glycine--tRNA ligase subunit beta, at 34,880 to 36,949
glyS
LU632_RS00190: glyQ - glycine--tRNA ligase subunit alpha, at 36,959 to 37,870
glyQ
LU632_RS00195: LU632_RS00195 - acyltransferase, at 38,068 to 39,064
_RS00195
Position (kb) 36
37
38 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.953 kb on + strand at 37.954 kb on - strand at 37.954 kb on - strand at 38.003 kb on + strand at 38.004 kb on - strand at 38.039 kb on - strand at 38.091 kb on - strand at 38.094 kb on + strand at 38.095 kb on - strand at 38.127 kb on + strand at 38.127 kb on + strand at 38.128 kb on - strand at 38.128 kb on - strand at 38.149 kb on + strand at 38.149 kb on + strand at 38.150 kb on - strand at 38.255 kb on - strand, within LU632_RS00195 at 38.280 kb on + strand, within LU632_RS00195 at 38.324 kb on - strand, within LU632_RS00195 at 38.324 kb on - strand, within LU632_RS00195 at 38.324 kb on - strand, within LU632_RS00195 at 38.344 kb on + strand, within LU632_RS00195 at 38.345 kb on - strand, within LU632_RS00195 at 38.346 kb on + strand, within LU632_RS00195 at 38.390 kb on + strand, within LU632_RS00195 at 38.390 kb on + strand, within LU632_RS00195 at 38.391 kb on - strand, within LU632_RS00195 at 38.415 kb on - strand, within LU632_RS00195 at 38.415 kb on - strand, within LU632_RS00195 at 38.450 kb on + strand, within LU632_RS00195 at 38.608 kb on + strand, within LU632_RS00195 at 38.609 kb on - strand, within LU632_RS00195 at 38.612 kb on + strand, within LU632_RS00195 at 38.613 kb on - strand, within LU632_RS00195 at 38.616 kb on - strand, within LU632_RS00195 at 38.777 kb on + strand, within LU632_RS00195 at 38.777 kb on + strand, within LU632_RS00195 at 38.784 kb on - strand, within LU632_RS00195 at 38.784 kb on - strand, within LU632_RS00195
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 37,953 + -1.1 37,954 - -0.1 37,954 - -0.4 38,003 + +1.7 38,004 - +0.2 38,039 - -0.1 38,091 - +0.9 38,094 + -0.1 38,095 - +1.0 38,127 + -0.2 38,127 + -0.4 38,128 - -0.4 38,128 - +1.1 38,149 + -0.1 38,149 + +2.2 38,150 - +0.5 38,255 - LU632_RS00195 0.19 -2.4 38,280 + LU632_RS00195 0.21 +1.4 38,324 - LU632_RS00195 0.26 -0.9 38,324 - LU632_RS00195 0.26 -1.1 38,324 - LU632_RS00195 0.26 +1.4 38,344 + LU632_RS00195 0.28 -1.2 38,345 - LU632_RS00195 0.28 +0.2 38,346 + LU632_RS00195 0.28 +0.0 38,390 + LU632_RS00195 0.32 -1.6 38,390 + LU632_RS00195 0.32 -1.3 38,391 - LU632_RS00195 0.32 +1.2 38,415 - LU632_RS00195 0.35 -1.4 38,415 - LU632_RS00195 0.35 -0.0 38,450 + LU632_RS00195 0.38 +1.9 38,608 + LU632_RS00195 0.54 -0.0 38,609 - LU632_RS00195 0.54 -0.4 38,612 + LU632_RS00195 0.55 -0.4 38,613 - LU632_RS00195 0.55 -0.8 38,616 - LU632_RS00195 0.55 -0.9 38,777 + LU632_RS00195 0.71 -0.1 38,777 + LU632_RS00195 0.71 -1.7 38,784 - LU632_RS00195 0.72 +0.0 38,784 - LU632_RS00195 0.72 +0.1
Or see this region's nucleotide sequence