Experiment: plant=Squash; plant sample=QP1; plant location=NA
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kduD and LU632_RS00065 are separated by 90 nucleotides LU632_RS00065 and LU632_RS00070 are separated by 73 nucleotides LU632_RS00070 and LU632_RS00075 are separated by 143 nucleotides
LU632_RS00060: kduD - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 12,621 to 13,382
kduD
LU632_RS00065: LU632_RS00065 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 13,473 to 14,210
_RS00065
LU632_RS00070: LU632_RS00070 - hypothetical protein, at 14,284 to 14,787
_RS00070
LU632_RS00075: LU632_RS00075 - LacI family DNA-binding transcriptional regulator, at 14,931 to 15,956
_RS00075
Position (kb) 14
15 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 13.332 kb on + strand at 13.332 kb on + strand at 13.334 kb on + strand at 13.335 kb on - strand at 13.344 kb on + strand at 13.346 kb on + strand at 13.346 kb on + strand at 13.346 kb on + strand at 13.347 kb on - strand at 13.347 kb on - strand at 13.347 kb on - strand at 13.347 kb on - strand at 13.428 kb on + strand at 13.562 kb on + strand, within LU632_RS00065 at 13.707 kb on + strand, within LU632_RS00065 at 13.708 kb on - strand, within LU632_RS00065 at 13.708 kb on - strand, within LU632_RS00065 at 13.708 kb on - strand, within LU632_RS00065 at 13.957 kb on + strand, within LU632_RS00065 at 14.285 kb on + strand at 14.286 kb on - strand at 14.341 kb on - strand, within LU632_RS00070 at 14.447 kb on + strand, within LU632_RS00070 at 14.674 kb on + strand, within LU632_RS00070 at 14.817 kb on - strand at 14.817 kb on - strand at 14.842 kb on - strand at 14.885 kb on + strand at 15.042 kb on - strand, within LU632_RS00075 at 15.458 kb on + strand, within LU632_RS00075 at 15.588 kb on + strand, within LU632_RS00075 at 15.595 kb on + strand, within LU632_RS00075 at 15.596 kb on - strand, within LU632_RS00075 at 15.599 kb on + strand, within LU632_RS00075 at 15.600 kb on - strand, within LU632_RS00075 at 15.600 kb on - strand, within LU632_RS00075 at 15.620 kb on - strand, within LU632_RS00075 at 15.728 kb on + strand, within LU632_RS00075 at 15.741 kb on - strand, within LU632_RS00075
Per-strain Table
Position Strand Gene LocusTag Fraction plant=Squash; plant sample=QP1; plant location=NA remove 13,332 + +0.8 13,332 + -1.7 13,334 + +0.8 13,335 - -0.7 13,344 + -0.9 13,346 + -3.1 13,346 + -1.2 13,346 + +0.9 13,347 - +0.3 13,347 - -2.2 13,347 - +4.7 13,347 - -1.5 13,428 + +0.7 13,562 + LU632_RS00065 0.12 -0.8 13,707 + LU632_RS00065 0.32 -1.3 13,708 - LU632_RS00065 0.32 -0.8 13,708 - LU632_RS00065 0.32 -0.9 13,708 - LU632_RS00065 0.32 +0.8 13,957 + LU632_RS00065 0.66 -0.3 14,285 + -1.1 14,286 - -1.3 14,341 - LU632_RS00070 0.11 -2.1 14,447 + LU632_RS00070 0.32 -1.2 14,674 + LU632_RS00070 0.77 -1.3 14,817 - +1.3 14,817 - -0.9 14,842 - -1.6 14,885 + +1.3 15,042 - LU632_RS00075 0.11 +0.4 15,458 + LU632_RS00075 0.51 -2.0 15,588 + LU632_RS00075 0.64 -1.3 15,595 + LU632_RS00075 0.65 -2.0 15,596 - LU632_RS00075 0.65 -1.1 15,599 + LU632_RS00075 0.65 +0.8 15,600 - LU632_RS00075 0.65 -1.1 15,600 - LU632_RS00075 0.65 -0.4 15,620 - LU632_RS00075 0.67 -0.7 15,728 + LU632_RS00075 0.78 +0.8 15,741 - LU632_RS00075 0.79 +2.4
Or see this region's nucleotide sequence