Experiment: Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04268 and ECD_04269 are separated by 89 nucleotides ECD_04269 and ECD_04270 are separated by 84 nucleotides ECD_04270 and ECD_04271 are separated by 51 nucleotides ECD_04271 and ECD_04272 overlap by 4 nucleotides
ECD_04268: ECD_04268 - lytic murein transglycosylase, soluble, at 4,548,087 to 4,550,024
_04268
ECD_04269: ECD_04269 - transcriptional repressor, tryptophan-binding, at 4,550,114 to 4,550,440
_04269
ECD_04270: ECD_04270 - non-canonical purine NTP phosphatase, ITPase/XTPase, at 4,550,525 to 4,551,046
_04270
ECD_04271: ECD_04271 - phosphatase, at 4,551,098 to 4,551,745
_04271
ECD_04272: ECD_04272 - right oriC-binding transcriptional activator, AraC family, at 4,551,742 to 4,552,611
_04272
Position (kb)
4550
4551
4552 Strain fitness (log2 ratio)
-2
-1
0
1 at 4549.525 kb on - strand, within ECD_04268 at 4549.545 kb on + strand, within ECD_04268 at 4549.545 kb on + strand, within ECD_04268 at 4549.546 kb on - strand, within ECD_04268 at 4549.658 kb on + strand, within ECD_04268 at 4549.659 kb on - strand, within ECD_04268 at 4549.667 kb on + strand, within ECD_04268 at 4549.668 kb on - strand, within ECD_04268 at 4549.679 kb on + strand, within ECD_04268 at 4549.709 kb on + strand, within ECD_04268 at 4549.709 kb on + strand, within ECD_04268 at 4549.710 kb on - strand, within ECD_04268 at 4549.710 kb on - strand, within ECD_04268 at 4549.764 kb on + strand, within ECD_04268 at 4549.774 kb on - strand, within ECD_04268 at 4549.774 kb on - strand, within ECD_04268 at 4549.803 kb on - strand, within ECD_04268 at 4549.822 kb on - strand, within ECD_04268 at 4549.901 kb on + strand at 4549.926 kb on + strand at 4549.927 kb on - strand at 4549.927 kb on - strand at 4549.931 kb on - strand at 4549.948 kb on - strand at 4549.956 kb on + strand at 4549.957 kb on - strand at 4549.957 kb on - strand at 4549.957 kb on - strand at 4549.957 kb on - strand at 4549.959 kb on + strand at 4549.959 kb on + strand at 4550.035 kb on + strand at 4550.036 kb on - strand at 4550.040 kb on + strand at 4550.041 kb on - strand at 4550.045 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.110 kb on + strand at 4550.111 kb on - strand at 4550.111 kb on - strand at 4550.111 kb on - strand at 4550.113 kb on + strand at 4550.113 kb on + strand at 4550.191 kb on + strand, within ECD_04269 at 4550.191 kb on + strand, within ECD_04269 at 4550.220 kb on + strand, within ECD_04269 at 4550.229 kb on + strand, within ECD_04269 at 4550.230 kb on - strand, within ECD_04269 at 4550.538 kb on + strand at 4550.540 kb on + strand at 4550.540 kb on + strand at 4550.540 kb on + strand at 4550.541 kb on - strand at 4550.666 kb on - strand, within ECD_04270 at 4550.666 kb on - strand, within ECD_04270 at 4550.741 kb on - strand, within ECD_04270 at 4550.953 kb on + strand, within ECD_04270 at 4551.047 kb on - strand at 4551.075 kb on - strand at 4551.075 kb on - strand at 4551.083 kb on - strand at 4551.083 kb on - strand at 4551.102 kb on + strand at 4551.103 kb on - strand at 4551.108 kb on + strand at 4551.109 kb on - strand at 4551.110 kb on + strand at 4551.110 kb on + strand at 4551.110 kb on + strand at 4551.110 kb on + strand at 4551.110 kb on + strand at 4551.110 kb on + strand at 4551.111 kb on - strand at 4551.111 kb on - strand at 4551.114 kb on + strand at 4551.114 kb on + strand at 4551.114 kb on + strand at 4551.115 kb on - strand at 4551.115 kb on - strand at 4551.115 kb on - strand at 4551.154 kb on + strand at 4551.247 kb on + strand, within ECD_04271 at 4551.248 kb on - strand, within ECD_04271 at 4551.345 kb on + strand, within ECD_04271 at 4551.345 kb on + strand, within ECD_04271 at 4551.345 kb on + strand, within ECD_04271 at 4551.345 kb on + strand, within ECD_04271 at 4551.346 kb on - strand, within ECD_04271 at 4551.373 kb on + strand, within ECD_04271 at 4551.442 kb on + strand, within ECD_04271 at 4551.443 kb on - strand, within ECD_04271 at 4551.574 kb on + strand, within ECD_04271 at 4551.613 kb on - strand, within ECD_04271 at 4551.622 kb on + strand, within ECD_04271 at 4551.623 kb on - strand, within ECD_04271 at 4551.632 kb on - strand, within ECD_04271 at 4551.726 kb on + strand at 4551.726 kb on + strand at 4551.726 kb on + strand at 4551.726 kb on + strand at 4551.727 kb on - strand at 4551.781 kb on - strand at 4551.882 kb on - strand, within ECD_04272 at 4551.894 kb on + strand, within ECD_04272 at 4551.926 kb on + strand, within ECD_04272 at 4551.927 kb on - strand, within ECD_04272 at 4551.927 kb on - strand, within ECD_04272 at 4551.931 kb on - strand, within ECD_04272 at 4551.931 kb on - strand, within ECD_04272 at 4551.942 kb on - strand, within ECD_04272 at 4551.979 kb on + strand, within ECD_04272 at 4551.980 kb on - strand, within ECD_04272 at 4551.980 kb on - strand, within ECD_04272 at 4551.984 kb on - strand, within ECD_04272 at 4551.984 kb on - strand, within ECD_04272 at 4552.018 kb on - strand, within ECD_04272 at 4552.019 kb on + strand, within ECD_04272 at 4552.019 kb on + strand, within ECD_04272 at 4552.020 kb on - strand, within ECD_04272 at 4552.025 kb on - strand, within ECD_04272 at 4552.025 kb on - strand, within ECD_04272
Per-strain Table
Position Strand Gene LocusTag Fraction Bas41 remove 4,549,525 - ECD_04268 0.74 -0.2 4,549,545 + ECD_04268 0.75 +0.2 4,549,545 + ECD_04268 0.75 +0.3 4,549,546 - ECD_04268 0.75 +0.3 4,549,658 + ECD_04268 0.81 -0.0 4,549,659 - ECD_04268 0.81 -0.5 4,549,667 + ECD_04268 0.82 -0.6 4,549,668 - ECD_04268 0.82 -0.8 4,549,679 + ECD_04268 0.82 -0.3 4,549,709 + ECD_04268 0.84 +1.1 4,549,709 + ECD_04268 0.84 -0.8 4,549,710 - ECD_04268 0.84 -0.5 4,549,710 - ECD_04268 0.84 +0.1 4,549,764 + ECD_04268 0.87 +0.7 4,549,774 - ECD_04268 0.87 +0.2 4,549,774 - ECD_04268 0.87 -0.3 4,549,803 - ECD_04268 0.89 -0.4 4,549,822 - ECD_04268 0.90 -0.6 4,549,901 + +1.6 4,549,926 + -0.9 4,549,927 - +0.0 4,549,927 - -0.4 4,549,931 - -1.5 4,549,948 - +0.7 4,549,956 + +0.4 4,549,957 - +0.8 4,549,957 - +0.1 4,549,957 - -0.4 4,549,957 - -0.1 4,549,959 + +0.8 4,549,959 + -0.3 4,550,035 + +0.2 4,550,036 - +1.2 4,550,040 + +1.2 4,550,041 - +0.2 4,550,045 + +0.1 4,550,110 + -0.4 4,550,110 + -0.3 4,550,110 + -0.3 4,550,110 + -0.8 4,550,110 + +0.1 4,550,110 + +0.2 4,550,110 + -1.0 4,550,110 + -1.8 4,550,111 - +0.7 4,550,111 - -0.6 4,550,111 - -0.9 4,550,113 + +0.2 4,550,113 + -0.8 4,550,191 + ECD_04269 0.24 +0.6 4,550,191 + ECD_04269 0.24 -1.2 4,550,220 + ECD_04269 0.32 -0.9 4,550,229 + ECD_04269 0.35 +0.0 4,550,230 - ECD_04269 0.35 -1.6 4,550,538 + +0.2 4,550,540 + +0.3 4,550,540 + -0.6 4,550,540 + +0.4 4,550,541 - +0.2 4,550,666 - ECD_04270 0.27 -0.5 4,550,666 - ECD_04270 0.27 -1.3 4,550,741 - ECD_04270 0.41 +0.4 4,550,953 + ECD_04270 0.82 -0.8 4,551,047 - +1.2 4,551,075 - -0.8 4,551,075 - -0.8 4,551,083 - +0.1 4,551,083 - -0.0 4,551,102 + +0.2 4,551,103 - -1.0 4,551,108 + -0.2 4,551,109 - +0.2 4,551,110 + +0.9 4,551,110 + +0.1 4,551,110 + +0.2 4,551,110 + -0.0 4,551,110 + -0.4 4,551,110 + -0.5 4,551,111 - -0.6 4,551,111 - +1.1 4,551,114 + +0.2 4,551,114 + -0.2 4,551,114 + -0.3 4,551,115 - +0.3 4,551,115 - +0.6 4,551,115 - +1.2 4,551,154 + -0.2 4,551,247 + ECD_04271 0.23 -0.3 4,551,248 - ECD_04271 0.23 +0.8 4,551,345 + ECD_04271 0.38 +0.4 4,551,345 + ECD_04271 0.38 +1.5 4,551,345 + ECD_04271 0.38 -0.0 4,551,345 + ECD_04271 0.38 -0.3 4,551,346 - ECD_04271 0.38 +1.2 4,551,373 + ECD_04271 0.42 -0.4 4,551,442 + ECD_04271 0.53 +0.8 4,551,443 - ECD_04271 0.53 -0.6 4,551,574 + ECD_04271 0.73 +1.4 4,551,613 - ECD_04271 0.79 +0.2 4,551,622 + ECD_04271 0.81 +0.9 4,551,623 - ECD_04271 0.81 +0.2 4,551,632 - ECD_04271 0.82 -0.1 4,551,726 + +0.8 4,551,726 + -0.6 4,551,726 + -0.2 4,551,726 + +0.0 4,551,727 - +0.1 4,551,781 - +0.0 4,551,882 - ECD_04272 0.16 +1.6 4,551,894 + ECD_04272 0.17 -0.6 4,551,926 + ECD_04272 0.21 -0.6 4,551,927 - ECD_04272 0.21 +0.2 4,551,927 - ECD_04272 0.21 -0.6 4,551,931 - ECD_04272 0.22 +0.4 4,551,931 - ECD_04272 0.22 +0.4 4,551,942 - ECD_04272 0.23 +0.5 4,551,979 + ECD_04272 0.27 +0.2 4,551,980 - ECD_04272 0.27 +0.6 4,551,980 - ECD_04272 0.27 -0.0 4,551,984 - ECD_04272 0.28 +0.9 4,551,984 - ECD_04272 0.28 +1.2 4,552,018 - ECD_04272 0.32 +0.5 4,552,019 + ECD_04272 0.32 +0.2 4,552,019 + ECD_04272 0.32 +0.4 4,552,020 - ECD_04272 0.32 +0.7 4,552,025 - ECD_04272 0.33 -0.5 4,552,025 - ECD_04272 0.33 +0.3
Or see this region's nucleotide sequence