Experiment: Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03452 and ECD_03453 are separated by 2 nucleotides ECD_03453 and ECD_03454 are separated by 536 nucleotides
ECD_03452: ECD_03452 - putative membrane fusion protein (MFP) component of efflux pump, at 3,633,371 to 3,634,507
_03452
ECD_03453: ECD_03453 - DUF3302 family inner membrane protein, at 3,634,510 to 3,634,872
_03453
ECD_03454: ECD_03454 - mannitol-specific PTS enzyme: IIA, IIB and IIC components, at 3,635,409 to 3,637,322
_03454
Position (kb)
3634
3635 Strain fitness (log2 ratio)
-1
0
1
2 at 3633.789 kb on + strand, within ECD_03452 at 3633.810 kb on - strand, within ECD_03452 at 3633.864 kb on + strand, within ECD_03452 at 3633.864 kb on + strand, within ECD_03452 at 3633.865 kb on - strand, within ECD_03452 at 3633.878 kb on - strand, within ECD_03452 at 3633.890 kb on + strand, within ECD_03452 at 3633.891 kb on - strand, within ECD_03452 at 3633.926 kb on - strand, within ECD_03452 at 3634.065 kb on + strand, within ECD_03452 at 3634.157 kb on + strand, within ECD_03452 at 3634.158 kb on - strand, within ECD_03452 at 3634.158 kb on - strand, within ECD_03452 at 3634.158 kb on - strand, within ECD_03452 at 3634.159 kb on + strand, within ECD_03452 at 3634.159 kb on + strand, within ECD_03452 at 3634.159 kb on + strand, within ECD_03452 at 3634.160 kb on - strand, within ECD_03452 at 3634.160 kb on - strand, within ECD_03452 at 3634.160 kb on - strand, within ECD_03452 at 3634.160 kb on - strand, within ECD_03452 at 3634.162 kb on + strand, within ECD_03452 at 3634.162 kb on + strand, within ECD_03452 at 3634.162 kb on + strand, within ECD_03452 at 3634.163 kb on - strand, within ECD_03452 at 3634.163 kb on - strand, within ECD_03452 at 3634.232 kb on - strand, within ECD_03452 at 3634.232 kb on - strand, within ECD_03452 at 3634.255 kb on + strand, within ECD_03452 at 3634.264 kb on + strand, within ECD_03452 at 3634.265 kb on - strand, within ECD_03452 at 3634.362 kb on + strand, within ECD_03452 at 3634.362 kb on + strand, within ECD_03452 at 3634.363 kb on - strand, within ECD_03452 at 3634.363 kb on - strand, within ECD_03452 at 3634.457 kb on - strand at 3634.457 kb on - strand at 3634.482 kb on + strand at 3634.482 kb on + strand at 3634.499 kb on + strand at 3634.500 kb on - strand at 3634.507 kb on + strand at 3634.508 kb on - strand at 3634.508 kb on - strand at 3634.511 kb on + strand at 3634.511 kb on + strand at 3634.512 kb on - strand at 3634.533 kb on - strand at 3634.714 kb on - strand, within ECD_03453 at 3634.743 kb on + strand, within ECD_03453 at 3634.860 kb on - strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.872 kb on + strand at 3634.873 kb on - strand at 3634.873 kb on - strand at 3634.873 kb on - strand at 3634.873 kb on - strand at 3634.873 kb on - strand at 3634.894 kb on - strand at 3634.951 kb on - strand at 3635.013 kb on + strand at 3635.013 kb on + strand at 3635.013 kb on + strand at 3635.017 kb on + strand at 3635.017 kb on + strand at 3635.017 kb on + strand at 3635.017 kb on + strand at 3635.018 kb on - strand at 3635.018 kb on - strand at 3635.030 kb on + strand at 3635.031 kb on - strand at 3635.031 kb on - strand at 3635.043 kb on + strand at 3635.053 kb on + strand at 3635.053 kb on + strand at 3635.084 kb on + strand at 3635.085 kb on - strand at 3635.152 kb on - strand at 3635.227 kb on + strand at 3635.228 kb on - strand at 3635.316 kb on + strand at 3635.321 kb on - strand at 3635.321 kb on - strand at 3635.321 kb on - strand at 3635.393 kb on - strand at 3635.408 kb on + strand at 3635.408 kb on + strand at 3635.408 kb on + strand at 3635.409 kb on - strand at 3635.478 kb on - strand at 3635.516 kb on - strand at 3635.580 kb on + strand at 3635.580 kb on + strand at 3635.580 kb on + strand at 3635.580 kb on + strand at 3635.580 kb on + strand at 3635.581 kb on - strand at 3635.581 kb on - strand at 3635.581 kb on - strand at 3635.581 kb on - strand at 3635.581 kb on - strand at 3635.606 kb on + strand, within ECD_03454 at 3635.607 kb on - strand, within ECD_03454 at 3635.607 kb on - strand, within ECD_03454 at 3635.709 kb on - strand, within ECD_03454 at 3635.761 kb on + strand, within ECD_03454 at 3635.769 kb on - strand, within ECD_03454 at 3635.801 kb on + strand, within ECD_03454
Per-strain Table
Position Strand Gene LocusTag Fraction Bas41 remove 3,633,789 + ECD_03452 0.37 +0.6 3,633,810 - ECD_03452 0.39 +0.6 3,633,864 + ECD_03452 0.43 +2.0 3,633,864 + ECD_03452 0.43 +0.6 3,633,865 - ECD_03452 0.43 -0.5 3,633,878 - ECD_03452 0.45 +0.1 3,633,890 + ECD_03452 0.46 -1.2 3,633,891 - ECD_03452 0.46 -0.7 3,633,926 - ECD_03452 0.49 -0.6 3,634,065 + ECD_03452 0.61 -0.0 3,634,157 + ECD_03452 0.69 +0.1 3,634,158 - ECD_03452 0.69 -0.4 3,634,158 - ECD_03452 0.69 -0.1 3,634,158 - ECD_03452 0.69 +0.8 3,634,159 + ECD_03452 0.69 +2.0 3,634,159 + ECD_03452 0.69 -0.6 3,634,159 + ECD_03452 0.69 -0.2 3,634,160 - ECD_03452 0.69 +2.0 3,634,160 - ECD_03452 0.69 -0.1 3,634,160 - ECD_03452 0.69 -1.3 3,634,160 - ECD_03452 0.69 -0.5 3,634,162 + ECD_03452 0.70 -0.1 3,634,162 + ECD_03452 0.70 -0.6 3,634,162 + ECD_03452 0.70 -0.6 3,634,163 - ECD_03452 0.70 -0.8 3,634,163 - ECD_03452 0.70 -0.1 3,634,232 - ECD_03452 0.76 -0.8 3,634,232 - ECD_03452 0.76 +0.1 3,634,255 + ECD_03452 0.78 +0.4 3,634,264 + ECD_03452 0.79 -0.9 3,634,265 - ECD_03452 0.79 +0.8 3,634,362 + ECD_03452 0.87 +1.1 3,634,362 + ECD_03452 0.87 -1.2 3,634,363 - ECD_03452 0.87 +1.1 3,634,363 - ECD_03452 0.87 -0.3 3,634,457 - +2.1 3,634,457 - +0.6 3,634,482 + +0.2 3,634,482 + +0.2 3,634,499 + +1.1 3,634,500 - +0.7 3,634,507 + +0.4 3,634,508 - +0.2 3,634,508 - +0.3 3,634,511 + +1.2 3,634,511 + -0.2 3,634,512 - +0.2 3,634,533 - -0.2 3,634,714 - ECD_03453 0.56 -0.6 3,634,743 + ECD_03453 0.64 -0.8 3,634,860 - -0.0 3,634,872 + +0.4 3,634,872 + -0.0 3,634,872 + -0.7 3,634,872 + +0.3 3,634,872 + +0.3 3,634,872 + -1.2 3,634,872 + +0.6 3,634,872 + +0.8 3,634,872 + +0.2 3,634,872 + +1.4 3,634,873 - -0.4 3,634,873 - +0.1 3,634,873 - -0.3 3,634,873 - +1.7 3,634,873 - -0.0 3,634,894 - -0.4 3,634,951 - +0.4 3,635,013 + +0.5 3,635,013 + +0.3 3,635,013 + -0.2 3,635,017 + +0.2 3,635,017 + -0.4 3,635,017 + +0.2 3,635,017 + -0.7 3,635,018 - -0.6 3,635,018 - +0.1 3,635,030 + +0.0 3,635,031 - +0.4 3,635,031 - +0.2 3,635,043 + -0.8 3,635,053 + +0.0 3,635,053 + +0.3 3,635,084 + +0.6 3,635,085 - -0.2 3,635,152 - +0.3 3,635,227 + +0.2 3,635,228 - +0.0 3,635,316 + +0.4 3,635,321 - -0.9 3,635,321 - -0.2 3,635,321 - -0.3 3,635,393 - -0.1 3,635,408 + -0.6 3,635,408 + -0.4 3,635,408 + +0.0 3,635,409 - -0.3 3,635,478 - +0.2 3,635,516 - +1.0 3,635,580 + +0.5 3,635,580 + -0.8 3,635,580 + +0.6 3,635,580 + +0.1 3,635,580 + -0.3 3,635,581 - -0.8 3,635,581 - +0.4 3,635,581 - -0.4 3,635,581 - -0.4 3,635,581 - -0.3 3,635,606 + ECD_03454 0.10 -0.2 3,635,607 - ECD_03454 0.10 +0.4 3,635,607 - ECD_03454 0.10 +0.0 3,635,709 - ECD_03454 0.16 -0.9 3,635,761 + ECD_03454 0.18 +0.4 3,635,769 - ECD_03454 0.19 -0.3 3,635,801 + ECD_03454 0.20 -0.0
Or see this region's nucleotide sequence