Strain Fitness in Escherichia coli BL21 around ECD_03453

Experiment: Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03452 and ECD_03453 are separated by 2 nucleotidesECD_03453 and ECD_03454 are separated by 536 nucleotides ECD_03452: ECD_03452 - putative membrane fusion protein (MFP) component of efflux pump, at 3,633,371 to 3,634,507 _03452 ECD_03453: ECD_03453 - DUF3302 family inner membrane protein, at 3,634,510 to 3,634,872 _03453 ECD_03454: ECD_03454 - mannitol-specific PTS enzyme: IIA, IIB and IIC components, at 3,635,409 to 3,637,322 _03454 Position (kb) 3634 3635Strain fitness (log2 ratio) -1 0 1 2at 3633.789 kb on + strand, within ECD_03452at 3633.810 kb on - strand, within ECD_03452at 3633.864 kb on + strand, within ECD_03452at 3633.864 kb on + strand, within ECD_03452at 3633.865 kb on - strand, within ECD_03452at 3633.878 kb on - strand, within ECD_03452at 3633.890 kb on + strand, within ECD_03452at 3633.891 kb on - strand, within ECD_03452at 3633.926 kb on - strand, within ECD_03452at 3634.065 kb on + strand, within ECD_03452at 3634.157 kb on + strand, within ECD_03452at 3634.158 kb on - strand, within ECD_03452at 3634.158 kb on - strand, within ECD_03452at 3634.158 kb on - strand, within ECD_03452at 3634.159 kb on + strand, within ECD_03452at 3634.159 kb on + strand, within ECD_03452at 3634.159 kb on + strand, within ECD_03452at 3634.160 kb on - strand, within ECD_03452at 3634.160 kb on - strand, within ECD_03452at 3634.160 kb on - strand, within ECD_03452at 3634.160 kb on - strand, within ECD_03452at 3634.162 kb on + strand, within ECD_03452at 3634.162 kb on + strand, within ECD_03452at 3634.162 kb on + strand, within ECD_03452at 3634.163 kb on - strand, within ECD_03452at 3634.163 kb on - strand, within ECD_03452at 3634.232 kb on - strand, within ECD_03452at 3634.232 kb on - strand, within ECD_03452at 3634.255 kb on + strand, within ECD_03452at 3634.264 kb on + strand, within ECD_03452at 3634.265 kb on - strand, within ECD_03452at 3634.362 kb on + strand, within ECD_03452at 3634.362 kb on + strand, within ECD_03452at 3634.363 kb on - strand, within ECD_03452at 3634.363 kb on - strand, within ECD_03452at 3634.457 kb on - strandat 3634.457 kb on - strandat 3634.482 kb on + strandat 3634.482 kb on + strandat 3634.499 kb on + strandat 3634.500 kb on - strandat 3634.507 kb on + strandat 3634.508 kb on - strandat 3634.508 kb on - strandat 3634.511 kb on + strandat 3634.511 kb on + strandat 3634.512 kb on - strandat 3634.533 kb on - strandat 3634.714 kb on - strand, within ECD_03453at 3634.743 kb on + strand, within ECD_03453at 3634.860 kb on - strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.872 kb on + strandat 3634.873 kb on - strandat 3634.873 kb on - strandat 3634.873 kb on - strandat 3634.873 kb on - strandat 3634.873 kb on - strandat 3634.894 kb on - strandat 3634.951 kb on - strandat 3635.013 kb on + strandat 3635.013 kb on + strandat 3635.013 kb on + strandat 3635.017 kb on + strandat 3635.017 kb on + strandat 3635.017 kb on + strandat 3635.017 kb on + strandat 3635.018 kb on - strandat 3635.018 kb on - strandat 3635.030 kb on + strandat 3635.031 kb on - strandat 3635.031 kb on - strandat 3635.043 kb on + strandat 3635.053 kb on + strandat 3635.053 kb on + strandat 3635.084 kb on + strandat 3635.085 kb on - strandat 3635.152 kb on - strandat 3635.227 kb on + strandat 3635.228 kb on - strandat 3635.316 kb on + strandat 3635.321 kb on - strandat 3635.321 kb on - strandat 3635.321 kb on - strandat 3635.393 kb on - strandat 3635.408 kb on + strandat 3635.408 kb on + strandat 3635.408 kb on + strandat 3635.409 kb on - strandat 3635.478 kb on - strandat 3635.516 kb on - strandat 3635.580 kb on + strandat 3635.580 kb on + strandat 3635.580 kb on + strandat 3635.580 kb on + strandat 3635.580 kb on + strandat 3635.581 kb on - strandat 3635.581 kb on - strandat 3635.581 kb on - strandat 3635.581 kb on - strandat 3635.581 kb on - strandat 3635.606 kb on + strand, within ECD_03454at 3635.607 kb on - strand, within ECD_03454at 3635.607 kb on - strand, within ECD_03454at 3635.709 kb on - strand, within ECD_03454at 3635.761 kb on + strand, within ECD_03454at 3635.769 kb on - strand, within ECD_03454at 3635.801 kb on + strand, within ECD_03454

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas41
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3,633,789 + ECD_03452 0.37 +0.6
3,633,810 - ECD_03452 0.39 +0.6
3,633,864 + ECD_03452 0.43 +2.0
3,633,864 + ECD_03452 0.43 +0.6
3,633,865 - ECD_03452 0.43 -0.5
3,633,878 - ECD_03452 0.45 +0.1
3,633,890 + ECD_03452 0.46 -1.2
3,633,891 - ECD_03452 0.46 -0.7
3,633,926 - ECD_03452 0.49 -0.6
3,634,065 + ECD_03452 0.61 -0.0
3,634,157 + ECD_03452 0.69 +0.1
3,634,158 - ECD_03452 0.69 -0.4
3,634,158 - ECD_03452 0.69 -0.1
3,634,158 - ECD_03452 0.69 +0.8
3,634,159 + ECD_03452 0.69 +2.0
3,634,159 + ECD_03452 0.69 -0.6
3,634,159 + ECD_03452 0.69 -0.2
3,634,160 - ECD_03452 0.69 +2.0
3,634,160 - ECD_03452 0.69 -0.1
3,634,160 - ECD_03452 0.69 -1.3
3,634,160 - ECD_03452 0.69 -0.5
3,634,162 + ECD_03452 0.70 -0.1
3,634,162 + ECD_03452 0.70 -0.6
3,634,162 + ECD_03452 0.70 -0.6
3,634,163 - ECD_03452 0.70 -0.8
3,634,163 - ECD_03452 0.70 -0.1
3,634,232 - ECD_03452 0.76 -0.8
3,634,232 - ECD_03452 0.76 +0.1
3,634,255 + ECD_03452 0.78 +0.4
3,634,264 + ECD_03452 0.79 -0.9
3,634,265 - ECD_03452 0.79 +0.8
3,634,362 + ECD_03452 0.87 +1.1
3,634,362 + ECD_03452 0.87 -1.2
3,634,363 - ECD_03452 0.87 +1.1
3,634,363 - ECD_03452 0.87 -0.3
3,634,457 - +2.1
3,634,457 - +0.6
3,634,482 + +0.2
3,634,482 + +0.2
3,634,499 + +1.1
3,634,500 - +0.7
3,634,507 + +0.4
3,634,508 - +0.2
3,634,508 - +0.3
3,634,511 + +1.2
3,634,511 + -0.2
3,634,512 - +0.2
3,634,533 - -0.2
3,634,714 - ECD_03453 0.56 -0.6
3,634,743 + ECD_03453 0.64 -0.8
3,634,860 - -0.0
3,634,872 + +0.4
3,634,872 + -0.0
3,634,872 + -0.7
3,634,872 + +0.3
3,634,872 + +0.3
3,634,872 + -1.2
3,634,872 + +0.6
3,634,872 + +0.8
3,634,872 + +0.2
3,634,872 + +1.4
3,634,873 - -0.4
3,634,873 - +0.1
3,634,873 - -0.3
3,634,873 - +1.7
3,634,873 - -0.0
3,634,894 - -0.4
3,634,951 - +0.4
3,635,013 + +0.5
3,635,013 + +0.3
3,635,013 + -0.2
3,635,017 + +0.2
3,635,017 + -0.4
3,635,017 + +0.2
3,635,017 + -0.7
3,635,018 - -0.6
3,635,018 - +0.1
3,635,030 + +0.0
3,635,031 - +0.4
3,635,031 - +0.2
3,635,043 + -0.8
3,635,053 + +0.0
3,635,053 + +0.3
3,635,084 + +0.6
3,635,085 - -0.2
3,635,152 - +0.3
3,635,227 + +0.2
3,635,228 - +0.0
3,635,316 + +0.4
3,635,321 - -0.9
3,635,321 - -0.2
3,635,321 - -0.3
3,635,393 - -0.1
3,635,408 + -0.6
3,635,408 + -0.4
3,635,408 + +0.0
3,635,409 - -0.3
3,635,478 - +0.2
3,635,516 - +1.0
3,635,580 + +0.5
3,635,580 + -0.8
3,635,580 + +0.6
3,635,580 + +0.1
3,635,580 + -0.3
3,635,581 - -0.8
3,635,581 - +0.4
3,635,581 - -0.4
3,635,581 - -0.4
3,635,581 - -0.3
3,635,606 + ECD_03454 0.10 -0.2
3,635,607 - ECD_03454 0.10 +0.4
3,635,607 - ECD_03454 0.10 +0.0
3,635,709 - ECD_03454 0.16 -0.9
3,635,761 + ECD_03454 0.18 +0.4
3,635,769 - ECD_03454 0.19 -0.3
3,635,801 + ECD_03454 0.20 -0.0

Or see this region's nucleotide sequence