Strain Fitness in Escherichia coli BL21 around ECD_03327

Experiment: Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03325 and ECD_03326 overlap by 1 nucleotidesECD_03326 and ECD_03327 overlap by 4 nucleotidesECD_03327 and ECD_03328 overlap by 1 nucleotidesECD_03328 and ECD_03329 overlap by 4 nucleotides ECD_03325: ECD_03325 - nickel/heme ABC transporter periplasmic binding protein, at 3,476,051 to 3,477,625 _03325 ECD_03326: ECD_03326 - nickel ABC transporter permease, at 3,477,625 to 3,478,569 _03326 ECD_03327: ECD_03327 - nickel ABC transporter permease, at 3,478,566 to 3,479,399 _03327 ECD_03328: ECD_03328 - nickel ABC transporter ATPase, at 3,479,399 to 3,480,163 _03328 ECD_03329: ECD_03329 - nickel ABC transporter ATPase, at 3,480,160 to 3,480,966 _03329 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -2 -1 0 1at 3477.569 kb on + strandat 3477.608 kb on - strandat 3477.608 kb on - strandat 3477.638 kb on + strandat 3477.638 kb on + strandat 3477.638 kb on + strandat 3477.638 kb on + strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.639 kb on - strandat 3477.736 kb on + strand, within ECD_03326at 3477.817 kb on + strand, within ECD_03326at 3477.817 kb on + strand, within ECD_03326at 3477.817 kb on + strand, within ECD_03326at 3477.904 kb on - strand, within ECD_03326at 3477.954 kb on - strand, within ECD_03326at 3478.028 kb on + strand, within ECD_03326at 3478.105 kb on + strand, within ECD_03326at 3478.179 kb on + strand, within ECD_03326at 3478.179 kb on + strand, within ECD_03326at 3478.194 kb on + strand, within ECD_03326at 3478.465 kb on - strand, within ECD_03326at 3478.465 kb on - strand, within ECD_03326at 3478.465 kb on - strand, within ECD_03326at 3478.741 kb on + strand, within ECD_03327at 3478.829 kb on - strand, within ECD_03327at 3478.838 kb on + strand, within ECD_03327at 3478.907 kb on + strand, within ECD_03327at 3478.907 kb on + strand, within ECD_03327at 3478.908 kb on - strand, within ECD_03327at 3478.908 kb on - strand, within ECD_03327at 3478.975 kb on + strand, within ECD_03327at 3478.976 kb on - strand, within ECD_03327at 3478.976 kb on - strand, within ECD_03327at 3479.010 kb on + strand, within ECD_03327at 3479.172 kb on - strand, within ECD_03327at 3479.172 kb on - strand, within ECD_03327at 3479.265 kb on + strand, within ECD_03327at 3479.266 kb on - strand, within ECD_03327at 3479.266 kb on - strand, within ECD_03327at 3479.267 kb on + strand, within ECD_03327at 3479.267 kb on + strand, within ECD_03327at 3479.267 kb on + strand, within ECD_03327at 3479.268 kb on - strand, within ECD_03327at 3479.268 kb on - strand, within ECD_03327at 3479.333 kb on + strandat 3479.397 kb on + strandat 3479.398 kb on - strandat 3479.418 kb on + strandat 3479.419 kb on - strandat 3479.422 kb on + strandat 3479.422 kb on + strandat 3479.422 kb on + strandat 3479.423 kb on - strandat 3479.455 kb on - strandat 3479.463 kb on + strandat 3479.464 kb on - strandat 3479.764 kb on - strand, within ECD_03328at 3479.919 kb on + strand, within ECD_03328at 3479.998 kb on + strand, within ECD_03328at 3480.050 kb on - strand, within ECD_03328at 3480.072 kb on + strand, within ECD_03328at 3480.072 kb on + strand, within ECD_03328at 3480.073 kb on - strand, within ECD_03328at 3480.140 kb on + strandat 3480.168 kb on - strandat 3480.168 kb on - strandat 3480.168 kb on - strandat 3480.172 kb on - strandat 3480.197 kb on - strandat 3480.341 kb on + strand, within ECD_03329at 3480.342 kb on - strand, within ECD_03329at 3480.342 kb on - strand, within ECD_03329at 3480.364 kb on - strand, within ECD_03329at 3480.364 kb on - strand, within ECD_03329at 3480.366 kb on + strand, within ECD_03329at 3480.366 kb on + strand, within ECD_03329at 3480.366 kb on + strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329at 3480.367 kb on - strand, within ECD_03329

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas41
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3,477,569 + +0.4
3,477,608 - -0.7
3,477,608 - +1.3
3,477,638 + +0.1
3,477,638 + -2.3
3,477,638 + +0.7
3,477,638 + +0.4
3,477,639 - +0.5
3,477,639 - +0.2
3,477,639 - +0.1
3,477,639 - +0.8
3,477,639 - +0.3
3,477,639 - +0.9
3,477,639 - +0.0
3,477,736 + ECD_03326 0.12 -1.0
3,477,817 + ECD_03326 0.20 -0.2
3,477,817 + ECD_03326 0.20 -0.5
3,477,817 + ECD_03326 0.20 -0.6
3,477,904 - ECD_03326 0.30 -0.1
3,477,954 - ECD_03326 0.35 -0.2
3,478,028 + ECD_03326 0.43 +0.9
3,478,105 + ECD_03326 0.51 +1.0
3,478,179 + ECD_03326 0.59 +0.9
3,478,179 + ECD_03326 0.59 -0.4
3,478,194 + ECD_03326 0.60 +0.0
3,478,465 - ECD_03326 0.89 -0.3
3,478,465 - ECD_03326 0.89 -0.1
3,478,465 - ECD_03326 0.89 +0.8
3,478,741 + ECD_03327 0.21 +0.1
3,478,829 - ECD_03327 0.32 -1.6
3,478,838 + ECD_03327 0.33 -0.6
3,478,907 + ECD_03327 0.41 -0.1
3,478,907 + ECD_03327 0.41 +0.4
3,478,908 - ECD_03327 0.41 -0.1
3,478,908 - ECD_03327 0.41 -0.5
3,478,975 + ECD_03327 0.49 +1.7
3,478,976 - ECD_03327 0.49 +0.3
3,478,976 - ECD_03327 0.49 -0.3
3,479,010 + ECD_03327 0.53 +0.1
3,479,172 - ECD_03327 0.73 -0.2
3,479,172 - ECD_03327 0.73 +0.9
3,479,265 + ECD_03327 0.84 +0.9
3,479,266 - ECD_03327 0.84 -0.8
3,479,266 - ECD_03327 0.84 -1.4
3,479,267 + ECD_03327 0.84 +0.2
3,479,267 + ECD_03327 0.84 -0.4
3,479,267 + ECD_03327 0.84 -0.4
3,479,268 - ECD_03327 0.84 +0.4
3,479,268 - ECD_03327 0.84 +1.2
3,479,333 + +0.1
3,479,397 + +1.2
3,479,398 - +0.7
3,479,418 + +0.2
3,479,419 - -0.3
3,479,422 + -0.3
3,479,422 + +1.3
3,479,422 + +0.3
3,479,423 - -0.0
3,479,455 - -0.3
3,479,463 + -0.4
3,479,464 - -0.7
3,479,764 - ECD_03328 0.48 -0.4
3,479,919 + ECD_03328 0.68 +0.0
3,479,998 + ECD_03328 0.78 -0.5
3,480,050 - ECD_03328 0.85 -0.3
3,480,072 + ECD_03328 0.88 -1.0
3,480,072 + ECD_03328 0.88 -0.3
3,480,073 - ECD_03328 0.88 +0.3
3,480,140 + -0.1
3,480,168 - +0.1
3,480,168 - -0.2
3,480,168 - +1.3
3,480,172 - -0.1
3,480,197 - +0.0
3,480,341 + ECD_03329 0.22 -0.1
3,480,342 - ECD_03329 0.23 -0.9
3,480,342 - ECD_03329 0.23 +0.3
3,480,364 - ECD_03329 0.25 +0.0
3,480,364 - ECD_03329 0.25 +0.2
3,480,366 + ECD_03329 0.26 +0.2
3,480,366 + ECD_03329 0.26 +1.3
3,480,366 + ECD_03329 0.26 +0.2
3,480,367 - ECD_03329 0.26 +0.5
3,480,367 - ECD_03329 0.26 +0.1
3,480,367 - ECD_03329 0.26 -0.5
3,480,367 - ECD_03329 0.26 +0.0

Or see this region's nucleotide sequence