Strain Fitness in Escherichia coli BL21 around ECD_03320

Experiment: Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03318 and ECD_03319 are separated by 101 nucleotidesECD_03319 and ECD_03320 are separated by 220 nucleotidesECD_03320 and ECD_03321 are separated by 72 nucleotidesECD_03321 and ECD_03322 are separated by 3 nucleotides ECD_03318: ECD_03318 - zinc, cobalt and lead efflux system, at 3,468,835 to 3,471,033 _03318 ECD_03319: ECD_03319 - mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase, at 3,471,135 to 3,471,380 _03319 ECD_03320: ECD_03320 - DUF165 family inner membrane protein, at 3,471,601 to 3,472,266 _03320 ECD_03321: ECD_03321 - putative lipoprotein, at 3,472,339 to 3,472,896 _03321 ECD_03322: ECD_03322 - putative arabinose efflux transporter, at 3,472,900 to 3,474,117 _03322 Position (kb) 3471 3472 3473Strain fitness (log2 ratio) -2 -1 0 1 2at 3470.895 kb on + strandat 3471.146 kb on + strandat 3471.147 kb on - strandat 3471.410 kb on + strandat 3471.416 kb on - strandat 3471.484 kb on + strandat 3471.484 kb on + strandat 3471.492 kb on + strandat 3471.530 kb on + strandat 3471.530 kb on + strandat 3471.530 kb on + strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.531 kb on - strandat 3471.540 kb on + strandat 3471.554 kb on + strandat 3471.554 kb on + strandat 3471.555 kb on - strandat 3471.555 kb on - strandat 3471.555 kb on - strandat 3471.558 kb on + strandat 3471.559 kb on - strandat 3471.559 kb on - strandat 3471.600 kb on + strandat 3471.600 kb on + strandat 3471.682 kb on - strand, within ECD_03320at 3471.685 kb on + strand, within ECD_03320at 3471.686 kb on - strand, within ECD_03320at 3471.686 kb on - strand, within ECD_03320at 3471.810 kb on + strand, within ECD_03320at 3471.850 kb on + strand, within ECD_03320at 3471.851 kb on - strand, within ECD_03320at 3471.851 kb on - strand, within ECD_03320at 3471.871 kb on + strand, within ECD_03320at 3471.871 kb on + strand, within ECD_03320at 3471.871 kb on + strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.872 kb on - strand, within ECD_03320at 3471.874 kb on - strand, within ECD_03320at 3471.955 kb on + strand, within ECD_03320at 3472.110 kb on + strand, within ECD_03320at 3472.192 kb on + strand, within ECD_03320at 3472.193 kb on - strand, within ECD_03320at 3472.209 kb on + strandat 3472.209 kb on + strandat 3472.210 kb on - strandat 3472.289 kb on + strandat 3472.353 kb on + strandat 3472.358 kb on - strandat 3472.358 kb on - strandat 3472.447 kb on - strand, within ECD_03321at 3472.509 kb on + strand, within ECD_03321at 3472.548 kb on + strand, within ECD_03321at 3472.549 kb on - strand, within ECD_03321at 3472.695 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.740 kb on + strand, within ECD_03321at 3472.741 kb on - strand, within ECD_03321at 3472.741 kb on - strand, within ECD_03321at 3472.741 kb on - strand, within ECD_03321at 3472.743 kb on + strand, within ECD_03321at 3472.743 kb on + strand, within ECD_03321at 3472.744 kb on - strand, within ECD_03321at 3472.768 kb on + strand, within ECD_03321at 3472.768 kb on + strand, within ECD_03321at 3472.875 kb on + strandat 3472.875 kb on + strandat 3472.875 kb on + strandat 3472.875 kb on + strandat 3472.878 kb on + strandat 3472.963 kb on + strandat 3472.964 kb on - strandat 3473.001 kb on - strandat 3473.074 kb on - strand, within ECD_03322at 3473.077 kb on + strand, within ECD_03322at 3473.084 kb on + strand, within ECD_03322at 3473.084 kb on + strand, within ECD_03322at 3473.084 kb on + strand, within ECD_03322at 3473.085 kb on - strand, within ECD_03322at 3473.085 kb on - strand, within ECD_03322at 3473.085 kb on - strand, within ECD_03322at 3473.182 kb on + strand, within ECD_03322at 3473.243 kb on - strand, within ECD_03322

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas41
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3,470,895 + -0.7
3,471,146 + -0.2
3,471,147 - +0.6
3,471,410 + +0.5
3,471,416 - +0.3
3,471,484 + -0.4
3,471,484 + +0.4
3,471,492 + +0.9
3,471,530 + -0.6
3,471,530 + +1.9
3,471,530 + -0.2
3,471,531 - +0.1
3,471,531 - +0.9
3,471,531 - -0.3
3,471,531 - +0.5
3,471,531 - +1.6
3,471,531 - +0.7
3,471,531 - -0.4
3,471,531 - -0.2
3,471,540 + +0.6
3,471,554 + +0.2
3,471,554 + -0.3
3,471,555 - -0.0
3,471,555 - -0.5
3,471,555 - -0.3
3,471,558 + -0.0
3,471,559 - +0.3
3,471,559 - +0.3
3,471,600 + -0.1
3,471,600 + +0.3
3,471,682 - ECD_03320 0.12 +0.2
3,471,685 + ECD_03320 0.13 -0.7
3,471,686 - ECD_03320 0.13 -0.2
3,471,686 - ECD_03320 0.13 +0.5
3,471,810 + ECD_03320 0.31 -0.8
3,471,850 + ECD_03320 0.37 +0.0
3,471,851 - ECD_03320 0.38 +0.3
3,471,851 - ECD_03320 0.38 +0.5
3,471,871 + ECD_03320 0.41 -0.2
3,471,871 + ECD_03320 0.41 +0.8
3,471,871 + ECD_03320 0.41 +0.1
3,471,872 - ECD_03320 0.41 -0.1
3,471,872 - ECD_03320 0.41 +1.3
3,471,872 - ECD_03320 0.41 -0.2
3,471,872 - ECD_03320 0.41 +0.2
3,471,872 - ECD_03320 0.41 +0.2
3,471,872 - ECD_03320 0.41 +0.8
3,471,872 - ECD_03320 0.41 +1.1
3,471,872 - ECD_03320 0.41 +0.2
3,471,872 - ECD_03320 0.41 +0.3
3,471,872 - ECD_03320 0.41 +0.4
3,471,874 - ECD_03320 0.41 -1.0
3,471,955 + ECD_03320 0.53 +0.4
3,472,110 + ECD_03320 0.76 +0.3
3,472,192 + ECD_03320 0.89 +1.8
3,472,193 - ECD_03320 0.89 +0.6
3,472,209 + +0.5
3,472,209 + +0.4
3,472,210 - +0.5
3,472,289 + +2.0
3,472,353 + +0.5
3,472,358 - -0.1
3,472,358 - -0.4
3,472,447 - ECD_03321 0.19 -1.3
3,472,509 + ECD_03321 0.30 +0.1
3,472,548 + ECD_03321 0.37 -0.4
3,472,549 - ECD_03321 0.38 +0.1
3,472,695 + ECD_03321 0.64 +0.6
3,472,740 + ECD_03321 0.72 +0.4
3,472,740 + ECD_03321 0.72 +0.1
3,472,740 + ECD_03321 0.72 -0.6
3,472,740 + ECD_03321 0.72 +0.0
3,472,741 - ECD_03321 0.72 +0.0
3,472,741 - ECD_03321 0.72 -0.0
3,472,741 - ECD_03321 0.72 +0.7
3,472,743 + ECD_03321 0.72 -0.0
3,472,743 + ECD_03321 0.72 -1.7
3,472,744 - ECD_03321 0.73 +0.1
3,472,768 + ECD_03321 0.77 +0.1
3,472,768 + ECD_03321 0.77 -0.1
3,472,875 + +0.2
3,472,875 + -2.0
3,472,875 + +1.2
3,472,875 + -0.7
3,472,878 + +0.8
3,472,963 + +0.0
3,472,964 - +1.2
3,473,001 - +1.5
3,473,074 - ECD_03322 0.14 -0.2
3,473,077 + ECD_03322 0.15 -0.6
3,473,084 + ECD_03322 0.15 +0.9
3,473,084 + ECD_03322 0.15 +0.1
3,473,084 + ECD_03322 0.15 -1.4
3,473,085 - ECD_03322 0.15 -0.5
3,473,085 - ECD_03322 0.15 -0.5
3,473,085 - ECD_03322 0.15 +0.4
3,473,182 + ECD_03322 0.23 -0.9
3,473,243 - ECD_03322 0.28 -0.2

Or see this region's nucleotide sequence