Strain Fitness in Escherichia coli BL21 around ECD_03173

Experiment: Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03171 and ECD_03172 are separated by 32 nucleotidesECD_03172 and ECD_03173 are separated by 237 nucleotidesECD_03173 and ECD_03174 are separated by 1 nucleotides ECD_03171: ECD_03171 - 50S ribosomal subunit protein L3, at 3,313,467 to 3,314,096 _03171 ECD_03172: ECD_03172 - 30S ribosomal subunit protein S10, at 3,314,129 to 3,314,440 _03172 ECD_03173: ECD_03173 - hypothetical protein, at 3,314,678 to 3,315,097 _03173 ECD_03174: ECD_03174 - general secretory pathway component, cryptic, at 3,315,099 to 3,316,568 _03174 Position (kb) 3314 3315 3316Strain fitness (log2 ratio) -2 -1 0 1 2at 3314.553 kb on - strandat 3314.553 kb on - strandat 3314.553 kb on - strandat 3314.553 kb on - strandat 3314.656 kb on - strandat 3314.656 kb on - strandat 3314.658 kb on + strandat 3314.659 kb on - strandat 3314.659 kb on - strandat 3314.752 kb on + strand, within ECD_03173at 3314.753 kb on - strand, within ECD_03173at 3314.860 kb on - strand, within ECD_03173at 3314.860 kb on - strand, within ECD_03173at 3314.919 kb on - strand, within ECD_03173at 3315.005 kb on + strand, within ECD_03173at 3315.006 kb on - strand, within ECD_03173at 3315.006 kb on - strand, within ECD_03173at 3315.009 kb on + strand, within ECD_03173at 3315.009 kb on + strand, within ECD_03173at 3315.009 kb on + strand, within ECD_03173at 3315.010 kb on - strand, within ECD_03173at 3315.010 kb on - strand, within ECD_03173at 3315.011 kb on + strand, within ECD_03173at 3315.011 kb on + strand, within ECD_03173at 3315.011 kb on + strand, within ECD_03173at 3315.012 kb on - strand, within ECD_03173at 3315.014 kb on + strand, within ECD_03173at 3315.015 kb on - strand, within ECD_03173at 3315.043 kb on + strand, within ECD_03173at 3315.084 kb on + strandat 3315.084 kb on + strandat 3315.085 kb on - strandat 3315.085 kb on - strandat 3315.085 kb on - strandat 3315.150 kb on + strandat 3315.150 kb on + strandat 3315.150 kb on + strandat 3315.151 kb on - strandat 3315.151 kb on - strandat 3315.151 kb on - strandat 3315.151 kb on - strandat 3315.151 kb on - strandat 3315.151 kb on - strandat 3315.154 kb on + strandat 3315.154 kb on + strandat 3315.155 kb on - strandat 3315.155 kb on - strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.186 kb on + strandat 3315.187 kb on - strandat 3315.259 kb on - strand, within ECD_03174at 3315.299 kb on + strand, within ECD_03174at 3315.315 kb on + strand, within ECD_03174at 3315.353 kb on + strand, within ECD_03174at 3315.362 kb on + strand, within ECD_03174at 3315.368 kb on + strand, within ECD_03174at 3315.369 kb on - strand, within ECD_03174at 3315.369 kb on - strand, within ECD_03174at 3315.407 kb on - strand, within ECD_03174at 3315.437 kb on + strand, within ECD_03174at 3315.437 kb on + strand, within ECD_03174at 3315.465 kb on + strand, within ECD_03174at 3315.466 kb on - strand, within ECD_03174at 3315.534 kb on - strand, within ECD_03174at 3315.564 kb on + strand, within ECD_03174at 3315.565 kb on - strand, within ECD_03174at 3315.565 kb on - strand, within ECD_03174at 3315.565 kb on - strand, within ECD_03174at 3315.565 kb on - strand, within ECD_03174at 3315.596 kb on + strand, within ECD_03174at 3315.663 kb on + strand, within ECD_03174at 3315.671 kb on - strand, within ECD_03174at 3315.671 kb on - strand, within ECD_03174at 3315.671 kb on - strand, within ECD_03174at 3315.671 kb on - strand, within ECD_03174at 3315.682 kb on - strand, within ECD_03174at 3315.693 kb on - strand, within ECD_03174at 3315.728 kb on + strand, within ECD_03174at 3315.729 kb on - strand, within ECD_03174at 3315.737 kb on + strand, within ECD_03174at 3315.737 kb on + strand, within ECD_03174at 3315.738 kb on - strand, within ECD_03174at 3315.738 kb on - strand, within ECD_03174at 3315.741 kb on + strand, within ECD_03174at 3315.757 kb on - strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.782 kb on + strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.783 kb on - strand, within ECD_03174at 3315.789 kb on - strand, within ECD_03174at 3315.818 kb on + strand, within ECD_03174at 3315.819 kb on - strand, within ECD_03174at 3315.819 kb on - strand, within ECD_03174at 3315.819 kb on - strand, within ECD_03174at 3315.885 kb on + strand, within ECD_03174at 3315.886 kb on - strand, within ECD_03174at 3315.892 kb on + strand, within ECD_03174at 3315.893 kb on - strand, within ECD_03174at 3315.945 kb on + strand, within ECD_03174at 3315.945 kb on + strand, within ECD_03174at 3315.946 kb on - strand, within ECD_03174at 3315.949 kb on - strand, within ECD_03174at 3316.000 kb on - strand, within ECD_03174at 3316.002 kb on + strand, within ECD_03174at 3316.033 kb on - strand, within ECD_03174at 3316.055 kb on + strand, within ECD_03174

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas41
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3,314,553 - -2.2
3,314,553 - -1.6
3,314,553 - +2.0
3,314,553 - -1.2
3,314,656 - -0.1
3,314,656 - -0.2
3,314,658 + -1.2
3,314,659 - +1.1
3,314,659 - -0.0
3,314,752 + ECD_03173 0.18 -0.5
3,314,753 - ECD_03173 0.18 -0.2
3,314,860 - ECD_03173 0.43 +0.3
3,314,860 - ECD_03173 0.43 -0.2
3,314,919 - ECD_03173 0.57 -0.4
3,315,005 + ECD_03173 0.78 +0.4
3,315,006 - ECD_03173 0.78 -0.9
3,315,006 - ECD_03173 0.78 -0.5
3,315,009 + ECD_03173 0.79 -0.3
3,315,009 + ECD_03173 0.79 +0.1
3,315,009 + ECD_03173 0.79 +0.1
3,315,010 - ECD_03173 0.79 -0.4
3,315,010 - ECD_03173 0.79 -0.4
3,315,011 + ECD_03173 0.79 -0.5
3,315,011 + ECD_03173 0.79 +0.3
3,315,011 + ECD_03173 0.79 -1.1
3,315,012 - ECD_03173 0.80 -0.2
3,315,014 + ECD_03173 0.80 +1.4
3,315,015 - ECD_03173 0.80 +0.5
3,315,043 + ECD_03173 0.87 -0.5
3,315,084 + -0.6
3,315,084 + -0.4
3,315,085 - +0.2
3,315,085 - +0.0
3,315,085 - -0.1
3,315,150 + +0.3
3,315,150 + +0.5
3,315,150 + +0.1
3,315,151 - +1.7
3,315,151 - -0.1
3,315,151 - -0.7
3,315,151 - +0.6
3,315,151 - -0.5
3,315,151 - -0.3
3,315,154 + -0.4
3,315,154 + +0.2
3,315,155 - -0.7
3,315,155 - +0.2
3,315,186 + +0.7
3,315,186 + -0.6
3,315,186 + +0.3
3,315,186 + -0.3
3,315,186 + +0.2
3,315,186 + +0.4
3,315,186 + +0.5
3,315,186 + +0.6
3,315,187 - -0.0
3,315,259 - ECD_03174 0.11 -0.1
3,315,299 + ECD_03174 0.14 -1.2
3,315,315 + ECD_03174 0.15 +0.7
3,315,353 + ECD_03174 0.17 -0.5
3,315,362 + ECD_03174 0.18 +0.4
3,315,368 + ECD_03174 0.18 -0.0
3,315,369 - ECD_03174 0.18 -0.7
3,315,369 - ECD_03174 0.18 -0.1
3,315,407 - ECD_03174 0.21 -0.2
3,315,437 + ECD_03174 0.23 +0.1
3,315,437 + ECD_03174 0.23 +0.6
3,315,465 + ECD_03174 0.25 -1.8
3,315,466 - ECD_03174 0.25 -0.2
3,315,534 - ECD_03174 0.30 +0.1
3,315,564 + ECD_03174 0.32 -0.4
3,315,565 - ECD_03174 0.32 +0.5
3,315,565 - ECD_03174 0.32 +0.1
3,315,565 - ECD_03174 0.32 +0.2
3,315,565 - ECD_03174 0.32 -0.0
3,315,596 + ECD_03174 0.34 -0.0
3,315,663 + ECD_03174 0.38 +1.3
3,315,671 - ECD_03174 0.39 -0.7
3,315,671 - ECD_03174 0.39 +1.0
3,315,671 - ECD_03174 0.39 -1.0
3,315,671 - ECD_03174 0.39 -1.7
3,315,682 - ECD_03174 0.40 +0.5
3,315,693 - ECD_03174 0.40 -0.8
3,315,728 + ECD_03174 0.43 +0.7
3,315,729 - ECD_03174 0.43 -0.1
3,315,737 + ECD_03174 0.43 +0.2
3,315,737 + ECD_03174 0.43 -0.2
3,315,738 - ECD_03174 0.43 -0.0
3,315,738 - ECD_03174 0.43 +0.2
3,315,741 + ECD_03174 0.44 +0.6
3,315,757 - ECD_03174 0.45 -0.4
3,315,782 + ECD_03174 0.46 -0.1
3,315,782 + ECD_03174 0.46 +0.0
3,315,782 + ECD_03174 0.46 +0.9
3,315,782 + ECD_03174 0.46 -0.4
3,315,782 + ECD_03174 0.46 +0.3
3,315,782 + ECD_03174 0.46 +0.7
3,315,782 + ECD_03174 0.46 -1.1
3,315,782 + ECD_03174 0.46 -0.1
3,315,782 + ECD_03174 0.46 -0.0
3,315,783 - ECD_03174 0.47 +0.2
3,315,783 - ECD_03174 0.47 +0.1
3,315,783 - ECD_03174 0.47 -0.1
3,315,783 - ECD_03174 0.47 -1.0
3,315,783 - ECD_03174 0.47 -0.1
3,315,783 - ECD_03174 0.47 +0.2
3,315,783 - ECD_03174 0.47 +0.2
3,315,783 - ECD_03174 0.47 -0.6
3,315,789 - ECD_03174 0.47 +0.7
3,315,818 + ECD_03174 0.49 +0.3
3,315,819 - ECD_03174 0.49 +0.3
3,315,819 - ECD_03174 0.49 -0.9
3,315,819 - ECD_03174 0.49 +0.4
3,315,885 + ECD_03174 0.53 +0.2
3,315,886 - ECD_03174 0.54 -0.4
3,315,892 + ECD_03174 0.54 +0.8
3,315,893 - ECD_03174 0.54 +0.4
3,315,945 + ECD_03174 0.58 -0.7
3,315,945 + ECD_03174 0.58 +0.1
3,315,946 - ECD_03174 0.58 -0.1
3,315,949 - ECD_03174 0.58 +0.1
3,316,000 - ECD_03174 0.61 +0.1
3,316,002 + ECD_03174 0.61 +0.3
3,316,033 - ECD_03174 0.64 +1.3
3,316,055 + ECD_03174 0.65 +0.5

Or see this region's nucleotide sequence