Experiment: Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03171 and ECD_03172 are separated by 32 nucleotides ECD_03172 and ECD_03173 are separated by 237 nucleotides ECD_03173 and ECD_03174 are separated by 1 nucleotides
ECD_03171: ECD_03171 - 50S ribosomal subunit protein L3, at 3,313,467 to 3,314,096
_03171
ECD_03172: ECD_03172 - 30S ribosomal subunit protein S10, at 3,314,129 to 3,314,440
_03172
ECD_03173: ECD_03173 - hypothetical protein, at 3,314,678 to 3,315,097
_03173
ECD_03174: ECD_03174 - general secretory pathway component, cryptic, at 3,315,099 to 3,316,568
_03174
Position (kb)
3314
3315
3316 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3314.553 kb on - strand at 3314.553 kb on - strand at 3314.553 kb on - strand at 3314.553 kb on - strand at 3314.656 kb on - strand at 3314.656 kb on - strand at 3314.658 kb on + strand at 3314.659 kb on - strand at 3314.659 kb on - strand at 3314.752 kb on + strand, within ECD_03173 at 3314.753 kb on - strand, within ECD_03173 at 3314.860 kb on - strand, within ECD_03173 at 3314.860 kb on - strand, within ECD_03173 at 3314.919 kb on - strand, within ECD_03173 at 3315.005 kb on + strand, within ECD_03173 at 3315.006 kb on - strand, within ECD_03173 at 3315.006 kb on - strand, within ECD_03173 at 3315.009 kb on + strand, within ECD_03173 at 3315.009 kb on + strand, within ECD_03173 at 3315.009 kb on + strand, within ECD_03173 at 3315.010 kb on - strand, within ECD_03173 at 3315.010 kb on - strand, within ECD_03173 at 3315.011 kb on + strand, within ECD_03173 at 3315.011 kb on + strand, within ECD_03173 at 3315.011 kb on + strand, within ECD_03173 at 3315.012 kb on - strand, within ECD_03173 at 3315.014 kb on + strand, within ECD_03173 at 3315.015 kb on - strand, within ECD_03173 at 3315.043 kb on + strand, within ECD_03173 at 3315.084 kb on + strand at 3315.084 kb on + strand at 3315.085 kb on - strand at 3315.085 kb on - strand at 3315.085 kb on - strand at 3315.150 kb on + strand at 3315.150 kb on + strand at 3315.150 kb on + strand at 3315.151 kb on - strand at 3315.151 kb on - strand at 3315.151 kb on - strand at 3315.151 kb on - strand at 3315.151 kb on - strand at 3315.151 kb on - strand at 3315.154 kb on + strand at 3315.154 kb on + strand at 3315.155 kb on - strand at 3315.155 kb on - strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.186 kb on + strand at 3315.187 kb on - strand at 3315.259 kb on - strand, within ECD_03174 at 3315.299 kb on + strand, within ECD_03174 at 3315.315 kb on + strand, within ECD_03174 at 3315.353 kb on + strand, within ECD_03174 at 3315.362 kb on + strand, within ECD_03174 at 3315.368 kb on + strand, within ECD_03174 at 3315.369 kb on - strand, within ECD_03174 at 3315.369 kb on - strand, within ECD_03174 at 3315.407 kb on - strand, within ECD_03174 at 3315.437 kb on + strand, within ECD_03174 at 3315.437 kb on + strand, within ECD_03174 at 3315.465 kb on + strand, within ECD_03174 at 3315.466 kb on - strand, within ECD_03174 at 3315.534 kb on - strand, within ECD_03174 at 3315.564 kb on + strand, within ECD_03174 at 3315.565 kb on - strand, within ECD_03174 at 3315.565 kb on - strand, within ECD_03174 at 3315.565 kb on - strand, within ECD_03174 at 3315.565 kb on - strand, within ECD_03174 at 3315.596 kb on + strand, within ECD_03174 at 3315.663 kb on + strand, within ECD_03174 at 3315.671 kb on - strand, within ECD_03174 at 3315.671 kb on - strand, within ECD_03174 at 3315.671 kb on - strand, within ECD_03174 at 3315.671 kb on - strand, within ECD_03174 at 3315.682 kb on - strand, within ECD_03174 at 3315.693 kb on - strand, within ECD_03174 at 3315.728 kb on + strand, within ECD_03174 at 3315.729 kb on - strand, within ECD_03174 at 3315.737 kb on + strand, within ECD_03174 at 3315.737 kb on + strand, within ECD_03174 at 3315.738 kb on - strand, within ECD_03174 at 3315.738 kb on - strand, within ECD_03174 at 3315.741 kb on + strand, within ECD_03174 at 3315.757 kb on - strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.782 kb on + strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.783 kb on - strand, within ECD_03174 at 3315.789 kb on - strand, within ECD_03174 at 3315.818 kb on + strand, within ECD_03174 at 3315.819 kb on - strand, within ECD_03174 at 3315.819 kb on - strand, within ECD_03174 at 3315.819 kb on - strand, within ECD_03174 at 3315.885 kb on + strand, within ECD_03174 at 3315.886 kb on - strand, within ECD_03174 at 3315.892 kb on + strand, within ECD_03174 at 3315.893 kb on - strand, within ECD_03174 at 3315.945 kb on + strand, within ECD_03174 at 3315.945 kb on + strand, within ECD_03174 at 3315.946 kb on - strand, within ECD_03174 at 3315.949 kb on - strand, within ECD_03174 at 3316.000 kb on - strand, within ECD_03174 at 3316.002 kb on + strand, within ECD_03174 at 3316.033 kb on - strand, within ECD_03174 at 3316.055 kb on + strand, within ECD_03174
Per-strain Table
Position Strand Gene LocusTag Fraction Bas41 remove 3,314,553 - -2.2 3,314,553 - -1.6 3,314,553 - +2.0 3,314,553 - -1.2 3,314,656 - -0.1 3,314,656 - -0.2 3,314,658 + -1.2 3,314,659 - +1.1 3,314,659 - -0.0 3,314,752 + ECD_03173 0.18 -0.5 3,314,753 - ECD_03173 0.18 -0.2 3,314,860 - ECD_03173 0.43 +0.3 3,314,860 - ECD_03173 0.43 -0.2 3,314,919 - ECD_03173 0.57 -0.4 3,315,005 + ECD_03173 0.78 +0.4 3,315,006 - ECD_03173 0.78 -0.9 3,315,006 - ECD_03173 0.78 -0.5 3,315,009 + ECD_03173 0.79 -0.3 3,315,009 + ECD_03173 0.79 +0.1 3,315,009 + ECD_03173 0.79 +0.1 3,315,010 - ECD_03173 0.79 -0.4 3,315,010 - ECD_03173 0.79 -0.4 3,315,011 + ECD_03173 0.79 -0.5 3,315,011 + ECD_03173 0.79 +0.3 3,315,011 + ECD_03173 0.79 -1.1 3,315,012 - ECD_03173 0.80 -0.2 3,315,014 + ECD_03173 0.80 +1.4 3,315,015 - ECD_03173 0.80 +0.5 3,315,043 + ECD_03173 0.87 -0.5 3,315,084 + -0.6 3,315,084 + -0.4 3,315,085 - +0.2 3,315,085 - +0.0 3,315,085 - -0.1 3,315,150 + +0.3 3,315,150 + +0.5 3,315,150 + +0.1 3,315,151 - +1.7 3,315,151 - -0.1 3,315,151 - -0.7 3,315,151 - +0.6 3,315,151 - -0.5 3,315,151 - -0.3 3,315,154 + -0.4 3,315,154 + +0.2 3,315,155 - -0.7 3,315,155 - +0.2 3,315,186 + +0.7 3,315,186 + -0.6 3,315,186 + +0.3 3,315,186 + -0.3 3,315,186 + +0.2 3,315,186 + +0.4 3,315,186 + +0.5 3,315,186 + +0.6 3,315,187 - -0.0 3,315,259 - ECD_03174 0.11 -0.1 3,315,299 + ECD_03174 0.14 -1.2 3,315,315 + ECD_03174 0.15 +0.7 3,315,353 + ECD_03174 0.17 -0.5 3,315,362 + ECD_03174 0.18 +0.4 3,315,368 + ECD_03174 0.18 -0.0 3,315,369 - ECD_03174 0.18 -0.7 3,315,369 - ECD_03174 0.18 -0.1 3,315,407 - ECD_03174 0.21 -0.2 3,315,437 + ECD_03174 0.23 +0.1 3,315,437 + ECD_03174 0.23 +0.6 3,315,465 + ECD_03174 0.25 -1.8 3,315,466 - ECD_03174 0.25 -0.2 3,315,534 - ECD_03174 0.30 +0.1 3,315,564 + ECD_03174 0.32 -0.4 3,315,565 - ECD_03174 0.32 +0.5 3,315,565 - ECD_03174 0.32 +0.1 3,315,565 - ECD_03174 0.32 +0.2 3,315,565 - ECD_03174 0.32 -0.0 3,315,596 + ECD_03174 0.34 -0.0 3,315,663 + ECD_03174 0.38 +1.3 3,315,671 - ECD_03174 0.39 -0.7 3,315,671 - ECD_03174 0.39 +1.0 3,315,671 - ECD_03174 0.39 -1.0 3,315,671 - ECD_03174 0.39 -1.7 3,315,682 - ECD_03174 0.40 +0.5 3,315,693 - ECD_03174 0.40 -0.8 3,315,728 + ECD_03174 0.43 +0.7 3,315,729 - ECD_03174 0.43 -0.1 3,315,737 + ECD_03174 0.43 +0.2 3,315,737 + ECD_03174 0.43 -0.2 3,315,738 - ECD_03174 0.43 -0.0 3,315,738 - ECD_03174 0.43 +0.2 3,315,741 + ECD_03174 0.44 +0.6 3,315,757 - ECD_03174 0.45 -0.4 3,315,782 + ECD_03174 0.46 -0.1 3,315,782 + ECD_03174 0.46 +0.0 3,315,782 + ECD_03174 0.46 +0.9 3,315,782 + ECD_03174 0.46 -0.4 3,315,782 + ECD_03174 0.46 +0.3 3,315,782 + ECD_03174 0.46 +0.7 3,315,782 + ECD_03174 0.46 -1.1 3,315,782 + ECD_03174 0.46 -0.1 3,315,782 + ECD_03174 0.46 -0.0 3,315,783 - ECD_03174 0.47 +0.2 3,315,783 - ECD_03174 0.47 +0.1 3,315,783 - ECD_03174 0.47 -0.1 3,315,783 - ECD_03174 0.47 -1.0 3,315,783 - ECD_03174 0.47 -0.1 3,315,783 - ECD_03174 0.47 +0.2 3,315,783 - ECD_03174 0.47 +0.2 3,315,783 - ECD_03174 0.47 -0.6 3,315,789 - ECD_03174 0.47 +0.7 3,315,818 + ECD_03174 0.49 +0.3 3,315,819 - ECD_03174 0.49 +0.3 3,315,819 - ECD_03174 0.49 -0.9 3,315,819 - ECD_03174 0.49 +0.4 3,315,885 + ECD_03174 0.53 +0.2 3,315,886 - ECD_03174 0.54 -0.4 3,315,892 + ECD_03174 0.54 +0.8 3,315,893 - ECD_03174 0.54 +0.4 3,315,945 + ECD_03174 0.58 -0.7 3,315,945 + ECD_03174 0.58 +0.1 3,315,946 - ECD_03174 0.58 -0.1 3,315,949 - ECD_03174 0.58 +0.1 3,316,000 - ECD_03174 0.61 +0.1 3,316,002 + ECD_03174 0.61 +0.3 3,316,033 - ECD_03174 0.64 +1.3 3,316,055 + ECD_03174 0.65 +0.5
Or see this region's nucleotide sequence