Strain Fitness in Escherichia coli BL21 around ECD_02882

Experiment: Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02881 and ECD_02882 are separated by 139 nucleotidesECD_02882 and ECD_02883 are separated by 39 nucleotides ECD_02881: ECD_02881 - cystathionine beta-lyase, PLP-dependent, at 3,019,673 to 3,020,860 _02881 ECD_02882: ECD_02882 - general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter, at 3,021,000 to 3,021,659 _02882 ECD_02883: ECD_02883 - transcriptional activator of yqhD, at 3,021,699 to 3,022,655 _02883 Position (kb) 3020 3021 3022Strain fitness (log2 ratio) -2 -1 0 1 2at 3020.114 kb on + strand, within ECD_02881at 3020.117 kb on - strand, within ECD_02881at 3020.218 kb on + strand, within ECD_02881at 3020.219 kb on - strand, within ECD_02881at 3020.219 kb on - strand, within ECD_02881at 3020.304 kb on - strand, within ECD_02881at 3020.385 kb on - strand, within ECD_02881at 3020.420 kb on + strand, within ECD_02881at 3020.420 kb on + strand, within ECD_02881at 3020.420 kb on + strand, within ECD_02881at 3020.421 kb on - strand, within ECD_02881at 3020.421 kb on - strand, within ECD_02881at 3020.421 kb on - strand, within ECD_02881at 3020.421 kb on - strand, within ECD_02881at 3020.422 kb on + strand, within ECD_02881at 3020.422 kb on + strand, within ECD_02881at 3020.422 kb on + strand, within ECD_02881at 3020.422 kb on + strand, within ECD_02881at 3020.422 kb on + strand, within ECD_02881at 3020.422 kb on + strand, within ECD_02881at 3020.423 kb on - strand, within ECD_02881at 3020.423 kb on - strand, within ECD_02881at 3020.423 kb on - strand, within ECD_02881at 3020.423 kb on - strand, within ECD_02881at 3020.423 kb on - strand, within ECD_02881at 3020.424 kb on + strand, within ECD_02881at 3020.424 kb on + strand, within ECD_02881at 3020.424 kb on + strand, within ECD_02881at 3020.425 kb on - strand, within ECD_02881at 3020.448 kb on + strand, within ECD_02881at 3020.449 kb on - strand, within ECD_02881at 3020.585 kb on - strand, within ECD_02881at 3020.618 kb on - strand, within ECD_02881at 3020.652 kb on - strand, within ECD_02881at 3020.734 kb on + strand, within ECD_02881at 3020.794 kb on + strandat 3020.794 kb on + strandat 3020.795 kb on - strandat 3020.856 kb on + strandat 3020.857 kb on - strandat 3020.857 kb on - strandat 3020.893 kb on + strandat 3020.894 kb on - strandat 3020.909 kb on + strandat 3020.954 kb on + strandat 3020.954 kb on + strandat 3020.954 kb on + strandat 3020.955 kb on - strandat 3020.955 kb on - strandat 3020.959 kb on + strandat 3020.959 kb on + strandat 3020.960 kb on - strandat 3020.968 kb on - strandat 3020.968 kb on - strandat 3020.968 kb on - strandat 3020.975 kb on + strandat 3020.976 kb on - strandat 3021.008 kb on + strandat 3021.008 kb on + strandat 3021.017 kb on + strandat 3021.018 kb on - strandat 3021.018 kb on - strandat 3021.069 kb on - strand, within ECD_02882at 3021.075 kb on - strand, within ECD_02882at 3021.084 kb on + strand, within ECD_02882at 3021.084 kb on + strand, within ECD_02882at 3021.084 kb on + strand, within ECD_02882at 3021.164 kb on - strand, within ECD_02882at 3021.209 kb on + strand, within ECD_02882at 3021.258 kb on + strand, within ECD_02882at 3021.258 kb on + strand, within ECD_02882at 3021.258 kb on + strand, within ECD_02882at 3021.259 kb on - strand, within ECD_02882at 3021.259 kb on - strand, within ECD_02882at 3021.261 kb on - strand, within ECD_02882at 3021.261 kb on - strand, within ECD_02882at 3021.284 kb on + strand, within ECD_02882at 3021.323 kb on + strand, within ECD_02882at 3021.324 kb on - strand, within ECD_02882at 3021.327 kb on + strand, within ECD_02882at 3021.328 kb on - strand, within ECD_02882at 3021.328 kb on - strand, within ECD_02882at 3021.407 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.523 kb on + strand, within ECD_02882at 3021.524 kb on - strand, within ECD_02882at 3021.527 kb on + strand, within ECD_02882at 3021.528 kb on - strand, within ECD_02882at 3021.528 kb on - strand, within ECD_02882at 3021.636 kb on - strandat 3021.645 kb on + strandat 3021.697 kb on - strandat 3021.697 kb on - strandat 3021.700 kb on + strandat 3021.701 kb on - strandat 3021.758 kb on - strandat 3021.758 kb on - strandat 3021.758 kb on - strandat 3021.764 kb on + strandat 3021.860 kb on + strand, within ECD_02883at 3021.871 kb on + strand, within ECD_02883at 3021.872 kb on - strand, within ECD_02883at 3021.884 kb on - strand, within ECD_02883at 3021.914 kb on + strand, within ECD_02883at 3021.915 kb on - strand, within ECD_02883at 3021.989 kb on - strand, within ECD_02883at 3021.989 kb on - strand, within ECD_02883at 3021.992 kb on + strand, within ECD_02883at 3021.993 kb on - strand, within ECD_02883at 3022.090 kb on + strand, within ECD_02883at 3022.090 kb on + strand, within ECD_02883at 3022.090 kb on + strand, within ECD_02883at 3022.091 kb on - strand, within ECD_02883at 3022.091 kb on - strand, within ECD_02883at 3022.091 kb on - strand, within ECD_02883at 3022.093 kb on + strand, within ECD_02883at 3022.128 kb on - strand, within ECD_02883at 3022.179 kb on + strand, within ECD_02883at 3022.276 kb on - strand, within ECD_02883at 3022.287 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.376 kb on - strand, within ECD_02883at 3022.390 kb on + strand, within ECD_02883at 3022.444 kb on - strand, within ECD_02883

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas41
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3,020,114 + ECD_02881 0.37 +1.3
3,020,117 - ECD_02881 0.37 +0.2
3,020,218 + ECD_02881 0.46 -0.0
3,020,219 - ECD_02881 0.46 +0.3
3,020,219 - ECD_02881 0.46 -0.9
3,020,304 - ECD_02881 0.53 -0.1
3,020,385 - ECD_02881 0.60 +0.4
3,020,420 + ECD_02881 0.63 +0.5
3,020,420 + ECD_02881 0.63 -0.9
3,020,420 + ECD_02881 0.63 -0.6
3,020,421 - ECD_02881 0.63 +0.0
3,020,421 - ECD_02881 0.63 -0.1
3,020,421 - ECD_02881 0.63 +0.2
3,020,421 - ECD_02881 0.63 -0.0
3,020,422 + ECD_02881 0.63 +1.7
3,020,422 + ECD_02881 0.63 +0.0
3,020,422 + ECD_02881 0.63 -0.0
3,020,422 + ECD_02881 0.63 -0.7
3,020,422 + ECD_02881 0.63 +0.3
3,020,422 + ECD_02881 0.63 -0.7
3,020,423 - ECD_02881 0.63 -0.7
3,020,423 - ECD_02881 0.63 +0.7
3,020,423 - ECD_02881 0.63 -1.3
3,020,423 - ECD_02881 0.63 -0.2
3,020,423 - ECD_02881 0.63 -0.7
3,020,424 + ECD_02881 0.63 +0.2
3,020,424 + ECD_02881 0.63 -0.0
3,020,424 + ECD_02881 0.63 +0.7
3,020,425 - ECD_02881 0.63 -0.7
3,020,448 + ECD_02881 0.65 -0.1
3,020,449 - ECD_02881 0.65 -0.7
3,020,585 - ECD_02881 0.77 +0.5
3,020,618 - ECD_02881 0.80 +0.4
3,020,652 - ECD_02881 0.82 -0.4
3,020,734 + ECD_02881 0.89 -0.9
3,020,794 + -0.6
3,020,794 + +0.9
3,020,795 - -0.7
3,020,856 + +0.2
3,020,857 - -0.3
3,020,857 - +0.7
3,020,893 + -0.2
3,020,894 - -0.3
3,020,909 + +0.4
3,020,954 + +0.9
3,020,954 + -0.3
3,020,954 + +0.2
3,020,955 - -1.0
3,020,955 - -0.2
3,020,959 + -0.3
3,020,959 + +0.5
3,020,960 - -0.2
3,020,968 - +0.3
3,020,968 - -0.3
3,020,968 - -0.4
3,020,975 + +0.3
3,020,976 - -0.4
3,021,008 + -0.1
3,021,008 + +0.1
3,021,017 + +0.3
3,021,018 - +0.0
3,021,018 - -1.0
3,021,069 - ECD_02882 0.10 +0.5
3,021,075 - ECD_02882 0.11 -0.0
3,021,084 + ECD_02882 0.13 -1.7
3,021,084 + ECD_02882 0.13 -0.5
3,021,084 + ECD_02882 0.13 -2.2
3,021,164 - ECD_02882 0.25 -1.5
3,021,209 + ECD_02882 0.32 +0.3
3,021,258 + ECD_02882 0.39 -0.3
3,021,258 + ECD_02882 0.39 -0.2
3,021,258 + ECD_02882 0.39 -1.0
3,021,259 - ECD_02882 0.39 -0.0
3,021,259 - ECD_02882 0.39 -1.3
3,021,261 - ECD_02882 0.40 +0.0
3,021,261 - ECD_02882 0.40 -1.5
3,021,284 + ECD_02882 0.43 -1.9
3,021,323 + ECD_02882 0.49 +1.2
3,021,324 - ECD_02882 0.49 -0.7
3,021,327 + ECD_02882 0.50 -0.9
3,021,328 - ECD_02882 0.50 -1.7
3,021,328 - ECD_02882 0.50 -1.0
3,021,407 + ECD_02882 0.62 +0.3
3,021,523 + ECD_02882 0.79 +0.8
3,021,523 + ECD_02882 0.79 +0.3
3,021,523 + ECD_02882 0.79 -1.4
3,021,523 + ECD_02882 0.79 -2.3
3,021,523 + ECD_02882 0.79 -0.1
3,021,524 - ECD_02882 0.79 +0.5
3,021,527 + ECD_02882 0.80 +0.3
3,021,528 - ECD_02882 0.80 -0.3
3,021,528 - ECD_02882 0.80 -2.5
3,021,636 - -0.5
3,021,645 + -0.6
3,021,697 - -0.0
3,021,697 - +2.6
3,021,700 + -1.0
3,021,701 - -0.6
3,021,758 - -0.9
3,021,758 - -0.5
3,021,758 - -2.1
3,021,764 + +0.5
3,021,860 + ECD_02883 0.17 -0.2
3,021,871 + ECD_02883 0.18 +0.4
3,021,872 - ECD_02883 0.18 -1.7
3,021,884 - ECD_02883 0.19 -0.6
3,021,914 + ECD_02883 0.22 -1.7
3,021,915 - ECD_02883 0.23 -0.6
3,021,989 - ECD_02883 0.30 +0.1
3,021,989 - ECD_02883 0.30 +0.3
3,021,992 + ECD_02883 0.31 -0.1
3,021,993 - ECD_02883 0.31 +0.5
3,022,090 + ECD_02883 0.41 +0.6
3,022,090 + ECD_02883 0.41 +0.1
3,022,090 + ECD_02883 0.41 -0.2
3,022,091 - ECD_02883 0.41 -0.5
3,022,091 - ECD_02883 0.41 +0.3
3,022,091 - ECD_02883 0.41 +1.5
3,022,093 + ECD_02883 0.41 -0.9
3,022,128 - ECD_02883 0.45 -0.7
3,022,179 + ECD_02883 0.50 +0.8
3,022,276 - ECD_02883 0.60 +0.5
3,022,287 - ECD_02883 0.61 -0.3
3,022,376 - ECD_02883 0.71 +0.3
3,022,376 - ECD_02883 0.71 +0.6
3,022,376 - ECD_02883 0.71 +0.6
3,022,376 - ECD_02883 0.71 -0.7
3,022,376 - ECD_02883 0.71 +0.3
3,022,390 + ECD_02883 0.72 +1.8
3,022,444 - ECD_02883 0.78 +0.2

Or see this region's nucleotide sequence