Experiment: Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02881 and ECD_02882 are separated by 139 nucleotides ECD_02882 and ECD_02883 are separated by 39 nucleotides
ECD_02881: ECD_02881 - cystathionine beta-lyase, PLP-dependent, at 3,019,673 to 3,020,860
_02881
ECD_02882: ECD_02882 - general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter, at 3,021,000 to 3,021,659
_02882
ECD_02883: ECD_02883 - transcriptional activator of yqhD, at 3,021,699 to 3,022,655
_02883
Position (kb)
3020
3021
3022 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3020.114 kb on + strand, within ECD_02881 at 3020.117 kb on - strand, within ECD_02881 at 3020.218 kb on + strand, within ECD_02881 at 3020.219 kb on - strand, within ECD_02881 at 3020.219 kb on - strand, within ECD_02881 at 3020.304 kb on - strand, within ECD_02881 at 3020.385 kb on - strand, within ECD_02881 at 3020.420 kb on + strand, within ECD_02881 at 3020.420 kb on + strand, within ECD_02881 at 3020.420 kb on + strand, within ECD_02881 at 3020.421 kb on - strand, within ECD_02881 at 3020.421 kb on - strand, within ECD_02881 at 3020.421 kb on - strand, within ECD_02881 at 3020.421 kb on - strand, within ECD_02881 at 3020.422 kb on + strand, within ECD_02881 at 3020.422 kb on + strand, within ECD_02881 at 3020.422 kb on + strand, within ECD_02881 at 3020.422 kb on + strand, within ECD_02881 at 3020.422 kb on + strand, within ECD_02881 at 3020.422 kb on + strand, within ECD_02881 at 3020.423 kb on - strand, within ECD_02881 at 3020.423 kb on - strand, within ECD_02881 at 3020.423 kb on - strand, within ECD_02881 at 3020.423 kb on - strand, within ECD_02881 at 3020.423 kb on - strand, within ECD_02881 at 3020.424 kb on + strand, within ECD_02881 at 3020.424 kb on + strand, within ECD_02881 at 3020.424 kb on + strand, within ECD_02881 at 3020.425 kb on - strand, within ECD_02881 at 3020.448 kb on + strand, within ECD_02881 at 3020.449 kb on - strand, within ECD_02881 at 3020.585 kb on - strand, within ECD_02881 at 3020.618 kb on - strand, within ECD_02881 at 3020.652 kb on - strand, within ECD_02881 at 3020.734 kb on + strand, within ECD_02881 at 3020.794 kb on + strand at 3020.794 kb on + strand at 3020.795 kb on - strand at 3020.856 kb on + strand at 3020.857 kb on - strand at 3020.857 kb on - strand at 3020.893 kb on + strand at 3020.894 kb on - strand at 3020.909 kb on + strand at 3020.954 kb on + strand at 3020.954 kb on + strand at 3020.954 kb on + strand at 3020.955 kb on - strand at 3020.955 kb on - strand at 3020.959 kb on + strand at 3020.959 kb on + strand at 3020.960 kb on - strand at 3020.968 kb on - strand at 3020.968 kb on - strand at 3020.968 kb on - strand at 3020.975 kb on + strand at 3020.976 kb on - strand at 3021.008 kb on + strand at 3021.008 kb on + strand at 3021.017 kb on + strand at 3021.018 kb on - strand at 3021.018 kb on - strand at 3021.069 kb on - strand, within ECD_02882 at 3021.075 kb on - strand, within ECD_02882 at 3021.084 kb on + strand, within ECD_02882 at 3021.084 kb on + strand, within ECD_02882 at 3021.084 kb on + strand, within ECD_02882 at 3021.164 kb on - strand, within ECD_02882 at 3021.209 kb on + strand, within ECD_02882 at 3021.258 kb on + strand, within ECD_02882 at 3021.258 kb on + strand, within ECD_02882 at 3021.258 kb on + strand, within ECD_02882 at 3021.259 kb on - strand, within ECD_02882 at 3021.259 kb on - strand, within ECD_02882 at 3021.261 kb on - strand, within ECD_02882 at 3021.261 kb on - strand, within ECD_02882 at 3021.284 kb on + strand, within ECD_02882 at 3021.323 kb on + strand, within ECD_02882 at 3021.324 kb on - strand, within ECD_02882 at 3021.327 kb on + strand, within ECD_02882 at 3021.328 kb on - strand, within ECD_02882 at 3021.328 kb on - strand, within ECD_02882 at 3021.407 kb on + strand, within ECD_02882 at 3021.523 kb on + strand, within ECD_02882 at 3021.523 kb on + strand, within ECD_02882 at 3021.523 kb on + strand, within ECD_02882 at 3021.523 kb on + strand, within ECD_02882 at 3021.523 kb on + strand, within ECD_02882 at 3021.524 kb on - strand, within ECD_02882 at 3021.527 kb on + strand, within ECD_02882 at 3021.528 kb on - strand, within ECD_02882 at 3021.528 kb on - strand, within ECD_02882 at 3021.636 kb on - strand at 3021.645 kb on + strand at 3021.697 kb on - strand at 3021.697 kb on - strand at 3021.700 kb on + strand at 3021.701 kb on - strand at 3021.758 kb on - strand at 3021.758 kb on - strand at 3021.758 kb on - strand at 3021.764 kb on + strand at 3021.860 kb on + strand, within ECD_02883 at 3021.871 kb on + strand, within ECD_02883 at 3021.872 kb on - strand, within ECD_02883 at 3021.884 kb on - strand, within ECD_02883 at 3021.914 kb on + strand, within ECD_02883 at 3021.915 kb on - strand, within ECD_02883 at 3021.989 kb on - strand, within ECD_02883 at 3021.989 kb on - strand, within ECD_02883 at 3021.992 kb on + strand, within ECD_02883 at 3021.993 kb on - strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.090 kb on + strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.091 kb on - strand, within ECD_02883 at 3022.093 kb on + strand, within ECD_02883 at 3022.128 kb on - strand, within ECD_02883 at 3022.179 kb on + strand, within ECD_02883 at 3022.276 kb on - strand, within ECD_02883 at 3022.287 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.376 kb on - strand, within ECD_02883 at 3022.390 kb on + strand, within ECD_02883 at 3022.444 kb on - strand, within ECD_02883
Per-strain Table
Position Strand Gene LocusTag Fraction Bas41 remove 3,020,114 + ECD_02881 0.37 +1.3 3,020,117 - ECD_02881 0.37 +0.2 3,020,218 + ECD_02881 0.46 -0.0 3,020,219 - ECD_02881 0.46 +0.3 3,020,219 - ECD_02881 0.46 -0.9 3,020,304 - ECD_02881 0.53 -0.1 3,020,385 - ECD_02881 0.60 +0.4 3,020,420 + ECD_02881 0.63 +0.5 3,020,420 + ECD_02881 0.63 -0.9 3,020,420 + ECD_02881 0.63 -0.6 3,020,421 - ECD_02881 0.63 +0.0 3,020,421 - ECD_02881 0.63 -0.1 3,020,421 - ECD_02881 0.63 +0.2 3,020,421 - ECD_02881 0.63 -0.0 3,020,422 + ECD_02881 0.63 +1.7 3,020,422 + ECD_02881 0.63 +0.0 3,020,422 + ECD_02881 0.63 -0.0 3,020,422 + ECD_02881 0.63 -0.7 3,020,422 + ECD_02881 0.63 +0.3 3,020,422 + ECD_02881 0.63 -0.7 3,020,423 - ECD_02881 0.63 -0.7 3,020,423 - ECD_02881 0.63 +0.7 3,020,423 - ECD_02881 0.63 -1.3 3,020,423 - ECD_02881 0.63 -0.2 3,020,423 - ECD_02881 0.63 -0.7 3,020,424 + ECD_02881 0.63 +0.2 3,020,424 + ECD_02881 0.63 -0.0 3,020,424 + ECD_02881 0.63 +0.7 3,020,425 - ECD_02881 0.63 -0.7 3,020,448 + ECD_02881 0.65 -0.1 3,020,449 - ECD_02881 0.65 -0.7 3,020,585 - ECD_02881 0.77 +0.5 3,020,618 - ECD_02881 0.80 +0.4 3,020,652 - ECD_02881 0.82 -0.4 3,020,734 + ECD_02881 0.89 -0.9 3,020,794 + -0.6 3,020,794 + +0.9 3,020,795 - -0.7 3,020,856 + +0.2 3,020,857 - -0.3 3,020,857 - +0.7 3,020,893 + -0.2 3,020,894 - -0.3 3,020,909 + +0.4 3,020,954 + +0.9 3,020,954 + -0.3 3,020,954 + +0.2 3,020,955 - -1.0 3,020,955 - -0.2 3,020,959 + -0.3 3,020,959 + +0.5 3,020,960 - -0.2 3,020,968 - +0.3 3,020,968 - -0.3 3,020,968 - -0.4 3,020,975 + +0.3 3,020,976 - -0.4 3,021,008 + -0.1 3,021,008 + +0.1 3,021,017 + +0.3 3,021,018 - +0.0 3,021,018 - -1.0 3,021,069 - ECD_02882 0.10 +0.5 3,021,075 - ECD_02882 0.11 -0.0 3,021,084 + ECD_02882 0.13 -1.7 3,021,084 + ECD_02882 0.13 -0.5 3,021,084 + ECD_02882 0.13 -2.2 3,021,164 - ECD_02882 0.25 -1.5 3,021,209 + ECD_02882 0.32 +0.3 3,021,258 + ECD_02882 0.39 -0.3 3,021,258 + ECD_02882 0.39 -0.2 3,021,258 + ECD_02882 0.39 -1.0 3,021,259 - ECD_02882 0.39 -0.0 3,021,259 - ECD_02882 0.39 -1.3 3,021,261 - ECD_02882 0.40 +0.0 3,021,261 - ECD_02882 0.40 -1.5 3,021,284 + ECD_02882 0.43 -1.9 3,021,323 + ECD_02882 0.49 +1.2 3,021,324 - ECD_02882 0.49 -0.7 3,021,327 + ECD_02882 0.50 -0.9 3,021,328 - ECD_02882 0.50 -1.7 3,021,328 - ECD_02882 0.50 -1.0 3,021,407 + ECD_02882 0.62 +0.3 3,021,523 + ECD_02882 0.79 +0.8 3,021,523 + ECD_02882 0.79 +0.3 3,021,523 + ECD_02882 0.79 -1.4 3,021,523 + ECD_02882 0.79 -2.3 3,021,523 + ECD_02882 0.79 -0.1 3,021,524 - ECD_02882 0.79 +0.5 3,021,527 + ECD_02882 0.80 +0.3 3,021,528 - ECD_02882 0.80 -0.3 3,021,528 - ECD_02882 0.80 -2.5 3,021,636 - -0.5 3,021,645 + -0.6 3,021,697 - -0.0 3,021,697 - +2.6 3,021,700 + -1.0 3,021,701 - -0.6 3,021,758 - -0.9 3,021,758 - -0.5 3,021,758 - -2.1 3,021,764 + +0.5 3,021,860 + ECD_02883 0.17 -0.2 3,021,871 + ECD_02883 0.18 +0.4 3,021,872 - ECD_02883 0.18 -1.7 3,021,884 - ECD_02883 0.19 -0.6 3,021,914 + ECD_02883 0.22 -1.7 3,021,915 - ECD_02883 0.23 -0.6 3,021,989 - ECD_02883 0.30 +0.1 3,021,989 - ECD_02883 0.30 +0.3 3,021,992 + ECD_02883 0.31 -0.1 3,021,993 - ECD_02883 0.31 +0.5 3,022,090 + ECD_02883 0.41 +0.6 3,022,090 + ECD_02883 0.41 +0.1 3,022,090 + ECD_02883 0.41 -0.2 3,022,091 - ECD_02883 0.41 -0.5 3,022,091 - ECD_02883 0.41 +0.3 3,022,091 - ECD_02883 0.41 +1.5 3,022,093 + ECD_02883 0.41 -0.9 3,022,128 - ECD_02883 0.45 -0.7 3,022,179 + ECD_02883 0.50 +0.8 3,022,276 - ECD_02883 0.60 +0.5 3,022,287 - ECD_02883 0.61 -0.3 3,022,376 - ECD_02883 0.71 +0.3 3,022,376 - ECD_02883 0.71 +0.6 3,022,376 - ECD_02883 0.71 +0.6 3,022,376 - ECD_02883 0.71 -0.7 3,022,376 - ECD_02883 0.71 +0.3 3,022,390 + ECD_02883 0.72 +1.8 3,022,444 - ECD_02883 0.78 +0.2
Or see this region's nucleotide sequence