Strain Fitness in Escherichia coli BL21 around ECD_02454

Experiment: Bas41

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02452 and ECD_02453 are separated by 65 nucleotidesECD_02453 and ECD_02454 are separated by 24 nucleotidesECD_02454 and ECD_02455 are separated by 208 nucleotides ECD_02452: ECD_02452 - IS1 protein InsB, at 2,563,384 to 2,563,887 _02452 ECD_02453: ECD_02453 - tRNA-specific adenosine deaminase, at 2,563,953 to 2,564,489 _02453 ECD_02454: ECD_02454 - phosphatidylglycerophosphatase C, membrane bound, at 2,564,514 to 2,565,149 _02454 ECD_02455: ECD_02455 - putative DNA-binding transcriptional regulator, at 2,565,358 to 2,566,206 _02455 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2564.490 kb on + strandat 2564.490 kb on + strandat 2564.511 kb on - strandat 2564.595 kb on - strand, within ECD_02454at 2564.831 kb on - strand, within ECD_02454at 2565.006 kb on + strand, within ECD_02454at 2565.007 kb on - strand, within ECD_02454at 2565.034 kb on - strand, within ECD_02454at 2565.061 kb on - strand, within ECD_02454at 2565.061 kb on - strand, within ECD_02454at 2565.087 kb on - strandat 2565.111 kb on + strandat 2565.112 kb on - strandat 2565.154 kb on + strandat 2565.194 kb on + strandat 2565.195 kb on - strandat 2565.195 kb on - strandat 2565.211 kb on - strandat 2565.369 kb on - strandat 2565.437 kb on + strandat 2565.437 kb on + strandat 2565.536 kb on - strand, within ECD_02455at 2565.555 kb on + strand, within ECD_02455at 2565.688 kb on + strand, within ECD_02455at 2565.688 kb on + strand, within ECD_02455at 2565.688 kb on + strand, within ECD_02455at 2565.688 kb on + strand, within ECD_02455at 2565.689 kb on - strand, within ECD_02455at 2565.689 kb on - strand, within ECD_02455at 2565.705 kb on + strand, within ECD_02455at 2565.708 kb on + strand, within ECD_02455at 2565.855 kb on + strand, within ECD_02455at 2565.878 kb on + strand, within ECD_02455at 2566.043 kb on - strand, within ECD_02455at 2566.044 kb on + strand, within ECD_02455at 2566.045 kb on - strand, within ECD_02455at 2566.045 kb on - strand, within ECD_02455

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas41
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2,564,490 + -0.0
2,564,490 + +0.3
2,564,511 - -0.6
2,564,595 - ECD_02454 0.13 -0.1
2,564,831 - ECD_02454 0.50 -1.9
2,565,006 + ECD_02454 0.77 -0.1
2,565,007 - ECD_02454 0.78 -1.2
2,565,034 - ECD_02454 0.82 -0.2
2,565,061 - ECD_02454 0.86 -1.1
2,565,061 - ECD_02454 0.86 +0.4
2,565,087 - -1.0
2,565,111 + +0.8
2,565,112 - +0.4
2,565,154 + +1.4
2,565,194 + +0.7
2,565,195 - +0.0
2,565,195 - -0.5
2,565,211 - +0.8
2,565,369 - +0.0
2,565,437 + +1.5
2,565,437 + +0.0
2,565,536 - ECD_02455 0.21 -0.0
2,565,555 + ECD_02455 0.23 -0.1
2,565,688 + ECD_02455 0.39 -0.4
2,565,688 + ECD_02455 0.39 +2.2
2,565,688 + ECD_02455 0.39 -0.4
2,565,688 + ECD_02455 0.39 +0.3
2,565,689 - ECD_02455 0.39 +0.4
2,565,689 - ECD_02455 0.39 -3.0
2,565,705 + ECD_02455 0.41 -0.0
2,565,708 + ECD_02455 0.41 -0.4
2,565,855 + ECD_02455 0.59 +0.9
2,565,878 + ECD_02455 0.61 +0.2
2,566,043 - ECD_02455 0.81 -1.1
2,566,044 + ECD_02455 0.81 -0.1
2,566,045 - ECD_02455 0.81 -0.3
2,566,045 - ECD_02455 0.81 +0.6

Or see this region's nucleotide sequence