Experiment: Bas41
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02452 and ECD_02453 are separated by 65 nucleotides ECD_02453 and ECD_02454 are separated by 24 nucleotides ECD_02454 and ECD_02455 are separated by 208 nucleotides
ECD_02452: ECD_02452 - IS1 protein InsB, at 2,563,384 to 2,563,887
_02452
ECD_02453: ECD_02453 - tRNA-specific adenosine deaminase, at 2,563,953 to 2,564,489
_02453
ECD_02454: ECD_02454 - phosphatidylglycerophosphatase C, membrane bound, at 2,564,514 to 2,565,149
_02454
ECD_02455: ECD_02455 - putative DNA-binding transcriptional regulator, at 2,565,358 to 2,566,206
_02455
Position (kb)
2564
2565
2566 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2564.490 kb on + strand at 2564.490 kb on + strand at 2564.511 kb on - strand at 2564.595 kb on - strand, within ECD_02454 at 2564.831 kb on - strand, within ECD_02454 at 2565.006 kb on + strand, within ECD_02454 at 2565.007 kb on - strand, within ECD_02454 at 2565.034 kb on - strand, within ECD_02454 at 2565.061 kb on - strand, within ECD_02454 at 2565.061 kb on - strand, within ECD_02454 at 2565.087 kb on - strand at 2565.111 kb on + strand at 2565.112 kb on - strand at 2565.154 kb on + strand at 2565.194 kb on + strand at 2565.195 kb on - strand at 2565.195 kb on - strand at 2565.211 kb on - strand at 2565.369 kb on - strand at 2565.437 kb on + strand at 2565.437 kb on + strand at 2565.536 kb on - strand, within ECD_02455 at 2565.555 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.688 kb on + strand, within ECD_02455 at 2565.689 kb on - strand, within ECD_02455 at 2565.689 kb on - strand, within ECD_02455 at 2565.705 kb on + strand, within ECD_02455 at 2565.708 kb on + strand, within ECD_02455 at 2565.855 kb on + strand, within ECD_02455 at 2565.878 kb on + strand, within ECD_02455 at 2566.043 kb on - strand, within ECD_02455 at 2566.044 kb on + strand, within ECD_02455 at 2566.045 kb on - strand, within ECD_02455 at 2566.045 kb on - strand, within ECD_02455
Per-strain Table
Position Strand Gene LocusTag Fraction Bas41 remove 2,564,490 + -0.0 2,564,490 + +0.3 2,564,511 - -0.6 2,564,595 - ECD_02454 0.13 -0.1 2,564,831 - ECD_02454 0.50 -1.9 2,565,006 + ECD_02454 0.77 -0.1 2,565,007 - ECD_02454 0.78 -1.2 2,565,034 - ECD_02454 0.82 -0.2 2,565,061 - ECD_02454 0.86 -1.1 2,565,061 - ECD_02454 0.86 +0.4 2,565,087 - -1.0 2,565,111 + +0.8 2,565,112 - +0.4 2,565,154 + +1.4 2,565,194 + +0.7 2,565,195 - +0.0 2,565,195 - -0.5 2,565,211 - +0.8 2,565,369 - +0.0 2,565,437 + +1.5 2,565,437 + +0.0 2,565,536 - ECD_02455 0.21 -0.0 2,565,555 + ECD_02455 0.23 -0.1 2,565,688 + ECD_02455 0.39 -0.4 2,565,688 + ECD_02455 0.39 +2.2 2,565,688 + ECD_02455 0.39 -0.4 2,565,688 + ECD_02455 0.39 +0.3 2,565,689 - ECD_02455 0.39 +0.4 2,565,689 - ECD_02455 0.39 -3.0 2,565,705 + ECD_02455 0.41 -0.0 2,565,708 + ECD_02455 0.41 -0.4 2,565,855 + ECD_02455 0.59 +0.9 2,565,878 + ECD_02455 0.61 +0.2 2,566,043 - ECD_02455 0.81 -1.1 2,566,044 + ECD_02455 0.81 -0.1 2,566,045 - ECD_02455 0.81 -0.3 2,566,045 - ECD_02455 0.81 +0.6
Or see this region's nucleotide sequence