Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04135 and ECD_t00083 are separated by 195 nucleotides ECD_t00083 and ECD_04136 are separated by 260 nucleotides
ECD_04135: ECD_04135 - broad specificity NADPH-dependent aldehyde reductase, Zn-containing, at 4,406,783 to 4,407,802
_04135
ECD_t00083: ECD_t00083 - tRNA-Leu, at 4,407,998 to 4,408,082
_t00083
ECD_04136: ECD_04136 - putative integrase, at 4,408,343 to 4,409,533
_04136
Position (kb)
4407
4408
4409 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4407.042 kb on + strand, within ECD_04135 at 4407.202 kb on + strand, within ECD_04135 at 4407.208 kb on + strand, within ECD_04135 at 4407.249 kb on - strand, within ECD_04135 at 4407.249 kb on - strand, within ECD_04135 at 4407.249 kb on - strand, within ECD_04135 at 4407.307 kb on + strand, within ECD_04135 at 4407.520 kb on + strand, within ECD_04135 at 4407.748 kb on - strand at 4407.784 kb on - strand at 4407.784 kb on - strand at 4407.837 kb on + strand at 4407.837 kb on + strand at 4407.891 kb on - strand at 4407.964 kb on - strand at 4407.965 kb on + strand at 4407.966 kb on - strand at 4407.986 kb on + strand at 4408.050 kb on + strand, within ECD_t00083 at 4408.050 kb on + strand, within ECD_t00083 at 4408.092 kb on - strand at 4408.095 kb on + strand at 4408.095 kb on + strand at 4408.119 kb on + strand at 4408.139 kb on + strand at 4408.140 kb on - strand at 4408.160 kb on + strand at 4408.161 kb on - strand at 4408.161 kb on - strand at 4408.196 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.204 kb on + strand at 4408.205 kb on - strand at 4408.205 kb on - strand at 4408.205 kb on - strand at 4408.205 kb on - strand at 4408.205 kb on - strand at 4408.205 kb on - strand at 4408.225 kb on - strand at 4408.247 kb on + strand at 4408.265 kb on - strand at 4408.282 kb on + strand at 4408.282 kb on + strand at 4408.283 kb on - strand at 4408.319 kb on + strand at 4408.320 kb on - strand at 4408.372 kb on + strand at 4408.376 kb on + strand at 4408.391 kb on + strand at 4408.433 kb on + strand at 4408.464 kb on + strand, within ECD_04136 at 4408.464 kb on + strand, within ECD_04136 at 4408.464 kb on + strand, within ECD_04136 at 4408.484 kb on - strand, within ECD_04136 at 4408.531 kb on + strand, within ECD_04136 at 4408.531 kb on + strand, within ECD_04136 at 4408.646 kb on - strand, within ECD_04136 at 4408.701 kb on + strand, within ECD_04136 at 4408.711 kb on + strand, within ECD_04136 at 4408.711 kb on + strand, within ECD_04136 at 4408.722 kb on + strand, within ECD_04136 at 4408.771 kb on + strand, within ECD_04136 at 4408.787 kb on + strand, within ECD_04136 at 4408.906 kb on + strand, within ECD_04136 at 4408.907 kb on - strand, within ECD_04136 at 4408.914 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.918 kb on + strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.919 kb on - strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.922 kb on + strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.923 kb on - strand, within ECD_04136 at 4408.924 kb on + strand, within ECD_04136 at 4408.931 kb on - strand, within ECD_04136 at 4408.931 kb on - strand, within ECD_04136 at 4408.954 kb on - strand, within ECD_04136 at 4408.975 kb on + strand, within ECD_04136 at 4409.032 kb on + strand, within ECD_04136 at 4409.032 kb on + strand, within ECD_04136
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 4,407,042 + ECD_04135 0.25 +0.8 4,407,202 + ECD_04135 0.41 +2.1 4,407,208 + ECD_04135 0.42 +1.1 4,407,249 - ECD_04135 0.46 +0.4 4,407,249 - ECD_04135 0.46 -0.0 4,407,249 - ECD_04135 0.46 -0.5 4,407,307 + ECD_04135 0.51 +0.4 4,407,520 + ECD_04135 0.72 -0.2 4,407,748 - +0.5 4,407,784 - +0.1 4,407,784 - +0.5 4,407,837 + +0.2 4,407,837 + +0.2 4,407,891 - +0.3 4,407,964 - +0.5 4,407,965 + -0.7 4,407,966 - +1.3 4,407,986 + -0.5 4,408,050 + ECD_t00083 0.61 -0.8 4,408,050 + ECD_t00083 0.61 -1.7 4,408,092 - -0.2 4,408,095 + -0.5 4,408,095 + -0.3 4,408,119 + -1.4 4,408,139 + -0.7 4,408,140 - +0.3 4,408,160 + -0.2 4,408,161 - -0.2 4,408,161 - +0.8 4,408,196 + -0.2 4,408,204 + -0.3 4,408,204 + +0.1 4,408,204 + -0.2 4,408,204 + -0.1 4,408,204 + -0.3 4,408,204 + +0.2 4,408,204 + +0.2 4,408,204 + -0.0 4,408,204 + +0.7 4,408,204 + +0.3 4,408,205 - -1.0 4,408,205 - -0.2 4,408,205 - +0.1 4,408,205 - +0.7 4,408,205 - -0.0 4,408,205 - -0.5 4,408,225 - -0.8 4,408,247 + +0.3 4,408,265 - +0.2 4,408,282 + +0.9 4,408,282 + -0.6 4,408,283 - -0.3 4,408,319 + +0.7 4,408,320 - -0.2 4,408,372 + -0.4 4,408,376 + +1.0 4,408,391 + +0.2 4,408,433 + +0.7 4,408,464 + ECD_04136 0.10 -1.1 4,408,464 + ECD_04136 0.10 +0.7 4,408,464 + ECD_04136 0.10 +0.6 4,408,484 - ECD_04136 0.12 +0.6 4,408,531 + ECD_04136 0.16 +0.2 4,408,531 + ECD_04136 0.16 -0.8 4,408,646 - ECD_04136 0.25 -0.5 4,408,701 + ECD_04136 0.30 +0.9 4,408,711 + ECD_04136 0.31 -0.4 4,408,711 + ECD_04136 0.31 -0.3 4,408,722 + ECD_04136 0.32 +0.8 4,408,771 + ECD_04136 0.36 +0.4 4,408,787 + ECD_04136 0.37 +0.4 4,408,906 + ECD_04136 0.47 +0.9 4,408,907 - ECD_04136 0.47 -0.6 4,408,914 + ECD_04136 0.48 +1.0 4,408,918 + ECD_04136 0.48 -0.4 4,408,918 + ECD_04136 0.48 +0.5 4,408,918 + ECD_04136 0.48 +0.4 4,408,918 + ECD_04136 0.48 -1.0 4,408,918 + ECD_04136 0.48 -0.5 4,408,919 - ECD_04136 0.48 -0.3 4,408,919 - ECD_04136 0.48 +0.5 4,408,919 - ECD_04136 0.48 +0.1 4,408,919 - ECD_04136 0.48 +0.3 4,408,922 + ECD_04136 0.49 -0.1 4,408,922 + ECD_04136 0.49 -0.7 4,408,922 + ECD_04136 0.49 +0.3 4,408,922 + ECD_04136 0.49 -0.0 4,408,922 + ECD_04136 0.49 +0.3 4,408,922 + ECD_04136 0.49 +0.2 4,408,922 + ECD_04136 0.49 -2.3 4,408,922 + ECD_04136 0.49 -0.4 4,408,923 - ECD_04136 0.49 -1.3 4,408,923 - ECD_04136 0.49 -0.6 4,408,923 - ECD_04136 0.49 -0.6 4,408,923 - ECD_04136 0.49 -0.7 4,408,923 - ECD_04136 0.49 +0.2 4,408,923 - ECD_04136 0.49 +0.3 4,408,923 - ECD_04136 0.49 -0.5 4,408,923 - ECD_04136 0.49 -0.4 4,408,924 + ECD_04136 0.49 +0.2 4,408,931 - ECD_04136 0.49 -1.7 4,408,931 - ECD_04136 0.49 -0.9 4,408,954 - ECD_04136 0.51 +1.5 4,408,975 + ECD_04136 0.53 +0.1 4,409,032 + ECD_04136 0.58 +0.3 4,409,032 + ECD_04136 0.58 -0.5
Or see this region's nucleotide sequence