Strain Fitness in Escherichia coli BL21 around ECD_04106

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04105 and ECD_04106 are separated by 158 nucleotidesECD_04106 and ECD_04107 are separated by 393 nucleotides ECD_04105: ECD_04105 - anaerobic ribonucleotide reductase activating protein, at 4,371,541 to 4,372,005 _04105 ECD_04106: ECD_04106 - anaerobic ribonucleoside-triphosphate reductase, at 4,372,164 to 4,374,302 _04106 ECD_04107: ECD_04107 - trehalose-6-P hydrolase, at 4,374,696 to 4,376,351 _04107 Position (kb) 4372 4373 4374 4375Strain fitness (log2 ratio) -1 0 1 2at 4371.326 kb on - strandat 4371.426 kb on + strandat 4371.476 kb on + strandat 4371.489 kb on - strandat 4371.539 kb on + strandat 4371.539 kb on + strandat 4371.539 kb on + strandat 4371.539 kb on + strandat 4371.685 kb on - strand, within ECD_04105at 4371.685 kb on - strand, within ECD_04105at 4371.739 kb on + strand, within ECD_04105at 4371.816 kb on + strand, within ECD_04105at 4371.841 kb on - strand, within ECD_04105at 4371.864 kb on + strand, within ECD_04105at 4371.864 kb on + strand, within ECD_04105at 4371.865 kb on - strand, within ECD_04105at 4371.865 kb on - strand, within ECD_04105at 4371.865 kb on - strand, within ECD_04105at 4371.905 kb on + strand, within ECD_04105at 4371.905 kb on + strand, within ECD_04105at 4371.905 kb on + strand, within ECD_04105at 4371.906 kb on - strand, within ECD_04105at 4371.906 kb on - strand, within ECD_04105at 4371.906 kb on - strand, within ECD_04105at 4371.989 kb on + strandat 4371.990 kb on - strandat 4371.990 kb on - strandat 4372.035 kb on - strandat 4372.035 kb on - strandat 4372.090 kb on - strandat 4372.117 kb on + strandat 4372.153 kb on + strandat 4372.170 kb on + strandat 4372.171 kb on - strandat 4372.220 kb on + strandat 4372.220 kb on + strandat 4372.229 kb on + strandat 4372.254 kb on + strandat 4372.255 kb on - strandat 4372.388 kb on + strand, within ECD_04106at 4372.388 kb on + strand, within ECD_04106at 4372.388 kb on + strand, within ECD_04106at 4372.389 kb on - strand, within ECD_04106at 4372.402 kb on + strand, within ECD_04106at 4372.403 kb on - strand, within ECD_04106at 4372.408 kb on - strand, within ECD_04106at 4372.417 kb on + strand, within ECD_04106at 4372.418 kb on - strand, within ECD_04106at 4372.423 kb on + strand, within ECD_04106at 4372.424 kb on - strand, within ECD_04106at 4372.585 kb on + strand, within ECD_04106at 4372.585 kb on + strand, within ECD_04106at 4372.586 kb on - strand, within ECD_04106at 4372.586 kb on - strand, within ECD_04106at 4372.752 kb on - strand, within ECD_04106at 4372.780 kb on + strand, within ECD_04106at 4372.845 kb on - strand, within ECD_04106at 4372.900 kb on - strand, within ECD_04106at 4372.919 kb on + strand, within ECD_04106at 4372.919 kb on + strand, within ECD_04106at 4372.921 kb on + strand, within ECD_04106at 4372.922 kb on - strand, within ECD_04106at 4372.922 kb on - strand, within ECD_04106at 4372.985 kb on + strand, within ECD_04106at 4373.058 kb on - strand, within ECD_04106at 4373.094 kb on - strand, within ECD_04106at 4373.190 kb on + strand, within ECD_04106at 4373.219 kb on - strand, within ECD_04106at 4373.264 kb on - strand, within ECD_04106at 4373.430 kb on + strand, within ECD_04106at 4373.469 kb on + strand, within ECD_04106at 4373.470 kb on - strand, within ECD_04106at 4373.501 kb on - strand, within ECD_04106at 4373.525 kb on + strand, within ECD_04106at 4373.645 kb on - strand, within ECD_04106at 4373.649 kb on - strand, within ECD_04106at 4373.649 kb on - strand, within ECD_04106at 4373.649 kb on - strand, within ECD_04106at 4373.738 kb on + strand, within ECD_04106at 4373.739 kb on - strand, within ECD_04106at 4373.885 kb on - strand, within ECD_04106at 4374.062 kb on - strand, within ECD_04106at 4374.083 kb on - strand, within ECD_04106at 4374.083 kb on - strand, within ECD_04106at 4374.218 kb on + strandat 4374.442 kb on + strandat 4374.442 kb on + strandat 4374.452 kb on + strandat 4374.453 kb on - strandat 4374.453 kb on - strandat 4374.453 kb on - strandat 4374.505 kb on + strandat 4374.506 kb on - strandat 4374.697 kb on + strandat 4374.774 kb on - strandat 4374.894 kb on + strand, within ECD_04107at 4374.895 kb on - strand, within ECD_04107at 4375.018 kb on - strand, within ECD_04107at 4375.224 kb on - strand, within ECD_04107at 4375.275 kb on - strand, within ECD_04107

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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4,371,326 - +1.0
4,371,426 + -0.4
4,371,476 + -0.2
4,371,489 - -0.8
4,371,539 + -0.0
4,371,539 + +0.0
4,371,539 + +0.2
4,371,539 + -0.2
4,371,685 - ECD_04105 0.31 +0.3
4,371,685 - ECD_04105 0.31 -0.9
4,371,739 + ECD_04105 0.43 +0.3
4,371,816 + ECD_04105 0.59 -0.2
4,371,841 - ECD_04105 0.65 -1.1
4,371,864 + ECD_04105 0.69 -0.0
4,371,864 + ECD_04105 0.69 +0.3
4,371,865 - ECD_04105 0.70 +0.4
4,371,865 - ECD_04105 0.70 -1.5
4,371,865 - ECD_04105 0.70 +0.2
4,371,905 + ECD_04105 0.78 -0.0
4,371,905 + ECD_04105 0.78 +0.2
4,371,905 + ECD_04105 0.78 +0.0
4,371,906 - ECD_04105 0.78 +0.0
4,371,906 - ECD_04105 0.78 +0.1
4,371,906 - ECD_04105 0.78 -1.2
4,371,989 + -0.1
4,371,990 - +0.6
4,371,990 - +0.3
4,372,035 - -0.2
4,372,035 - -0.1
4,372,090 - -0.6
4,372,117 + -0.9
4,372,153 + +0.6
4,372,170 + -0.1
4,372,171 - +0.0
4,372,220 + -0.7
4,372,220 + +0.6
4,372,229 + -0.4
4,372,254 + +0.3
4,372,255 - +0.3
4,372,388 + ECD_04106 0.10 +0.4
4,372,388 + ECD_04106 0.10 +0.5
4,372,388 + ECD_04106 0.10 +0.3
4,372,389 - ECD_04106 0.11 +0.2
4,372,402 + ECD_04106 0.11 +0.9
4,372,403 - ECD_04106 0.11 +0.2
4,372,408 - ECD_04106 0.11 -0.1
4,372,417 + ECD_04106 0.12 -0.9
4,372,418 - ECD_04106 0.12 +0.9
4,372,423 + ECD_04106 0.12 -0.5
4,372,424 - ECD_04106 0.12 +0.4
4,372,585 + ECD_04106 0.20 +1.4
4,372,585 + ECD_04106 0.20 +0.5
4,372,586 - ECD_04106 0.20 +0.8
4,372,586 - ECD_04106 0.20 -0.2
4,372,752 - ECD_04106 0.27 -0.7
4,372,780 + ECD_04106 0.29 -0.8
4,372,845 - ECD_04106 0.32 +0.4
4,372,900 - ECD_04106 0.34 -0.6
4,372,919 + ECD_04106 0.35 -0.2
4,372,919 + ECD_04106 0.35 +1.3
4,372,921 + ECD_04106 0.35 +0.4
4,372,922 - ECD_04106 0.35 +0.8
4,372,922 - ECD_04106 0.35 +0.5
4,372,985 + ECD_04106 0.38 -0.1
4,373,058 - ECD_04106 0.42 -0.5
4,373,094 - ECD_04106 0.43 +0.1
4,373,190 + ECD_04106 0.48 +0.6
4,373,219 - ECD_04106 0.49 -0.5
4,373,264 - ECD_04106 0.51 -0.3
4,373,430 + ECD_04106 0.59 -0.2
4,373,469 + ECD_04106 0.61 +1.1
4,373,470 - ECD_04106 0.61 -0.3
4,373,501 - ECD_04106 0.63 +1.1
4,373,525 + ECD_04106 0.64 -0.3
4,373,645 - ECD_04106 0.69 +0.3
4,373,649 - ECD_04106 0.69 +0.3
4,373,649 - ECD_04106 0.69 -1.4
4,373,649 - ECD_04106 0.69 -0.2
4,373,738 + ECD_04106 0.74 -0.6
4,373,739 - ECD_04106 0.74 +0.2
4,373,885 - ECD_04106 0.80 +0.3
4,374,062 - ECD_04106 0.89 +1.8
4,374,083 - ECD_04106 0.90 +0.1
4,374,083 - ECD_04106 0.90 -0.6
4,374,218 + +0.2
4,374,442 + -0.4
4,374,442 + -0.2
4,374,452 + -0.7
4,374,453 - -0.2
4,374,453 - -0.1
4,374,453 - +0.0
4,374,505 + -0.2
4,374,506 - -0.1
4,374,697 + -1.3
4,374,774 - -1.0
4,374,894 + ECD_04107 0.12 -1.5
4,374,895 - ECD_04107 0.12 +0.7
4,375,018 - ECD_04107 0.19 +1.5
4,375,224 - ECD_04107 0.32 -1.0
4,375,275 - ECD_04107 0.35 -0.5

Or see this region's nucleotide sequence