Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04105 and ECD_04106 are separated by 158 nucleotides ECD_04106 and ECD_04107 are separated by 393 nucleotides
ECD_04105: ECD_04105 - anaerobic ribonucleotide reductase activating protein, at 4,371,541 to 4,372,005
_04105
ECD_04106: ECD_04106 - anaerobic ribonucleoside-triphosphate reductase, at 4,372,164 to 4,374,302
_04106
ECD_04107: ECD_04107 - trehalose-6-P hydrolase, at 4,374,696 to 4,376,351
_04107
Position (kb)
4372
4373
4374
4375 Strain fitness (log2 ratio)
-1
0
1
2 at 4371.326 kb on - strand at 4371.426 kb on + strand at 4371.476 kb on + strand at 4371.489 kb on - strand at 4371.539 kb on + strand at 4371.539 kb on + strand at 4371.539 kb on + strand at 4371.539 kb on + strand at 4371.685 kb on - strand, within ECD_04105 at 4371.685 kb on - strand, within ECD_04105 at 4371.739 kb on + strand, within ECD_04105 at 4371.816 kb on + strand, within ECD_04105 at 4371.841 kb on - strand, within ECD_04105 at 4371.864 kb on + strand, within ECD_04105 at 4371.864 kb on + strand, within ECD_04105 at 4371.865 kb on - strand, within ECD_04105 at 4371.865 kb on - strand, within ECD_04105 at 4371.865 kb on - strand, within ECD_04105 at 4371.905 kb on + strand, within ECD_04105 at 4371.905 kb on + strand, within ECD_04105 at 4371.905 kb on + strand, within ECD_04105 at 4371.906 kb on - strand, within ECD_04105 at 4371.906 kb on - strand, within ECD_04105 at 4371.906 kb on - strand, within ECD_04105 at 4371.989 kb on + strand at 4371.990 kb on - strand at 4371.990 kb on - strand at 4372.035 kb on - strand at 4372.035 kb on - strand at 4372.090 kb on - strand at 4372.117 kb on + strand at 4372.153 kb on + strand at 4372.170 kb on + strand at 4372.171 kb on - strand at 4372.220 kb on + strand at 4372.220 kb on + strand at 4372.229 kb on + strand at 4372.254 kb on + strand at 4372.255 kb on - strand at 4372.388 kb on + strand, within ECD_04106 at 4372.388 kb on + strand, within ECD_04106 at 4372.388 kb on + strand, within ECD_04106 at 4372.389 kb on - strand, within ECD_04106 at 4372.402 kb on + strand, within ECD_04106 at 4372.403 kb on - strand, within ECD_04106 at 4372.408 kb on - strand, within ECD_04106 at 4372.417 kb on + strand, within ECD_04106 at 4372.418 kb on - strand, within ECD_04106 at 4372.423 kb on + strand, within ECD_04106 at 4372.424 kb on - strand, within ECD_04106 at 4372.585 kb on + strand, within ECD_04106 at 4372.585 kb on + strand, within ECD_04106 at 4372.586 kb on - strand, within ECD_04106 at 4372.586 kb on - strand, within ECD_04106 at 4372.752 kb on - strand, within ECD_04106 at 4372.780 kb on + strand, within ECD_04106 at 4372.845 kb on - strand, within ECD_04106 at 4372.900 kb on - strand, within ECD_04106 at 4372.919 kb on + strand, within ECD_04106 at 4372.919 kb on + strand, within ECD_04106 at 4372.921 kb on + strand, within ECD_04106 at 4372.922 kb on - strand, within ECD_04106 at 4372.922 kb on - strand, within ECD_04106 at 4372.985 kb on + strand, within ECD_04106 at 4373.058 kb on - strand, within ECD_04106 at 4373.094 kb on - strand, within ECD_04106 at 4373.190 kb on + strand, within ECD_04106 at 4373.219 kb on - strand, within ECD_04106 at 4373.264 kb on - strand, within ECD_04106 at 4373.430 kb on + strand, within ECD_04106 at 4373.469 kb on + strand, within ECD_04106 at 4373.470 kb on - strand, within ECD_04106 at 4373.501 kb on - strand, within ECD_04106 at 4373.525 kb on + strand, within ECD_04106 at 4373.645 kb on - strand, within ECD_04106 at 4373.649 kb on - strand, within ECD_04106 at 4373.649 kb on - strand, within ECD_04106 at 4373.649 kb on - strand, within ECD_04106 at 4373.738 kb on + strand, within ECD_04106 at 4373.739 kb on - strand, within ECD_04106 at 4373.885 kb on - strand, within ECD_04106 at 4374.062 kb on - strand, within ECD_04106 at 4374.083 kb on - strand, within ECD_04106 at 4374.083 kb on - strand, within ECD_04106 at 4374.218 kb on + strand at 4374.442 kb on + strand at 4374.442 kb on + strand at 4374.452 kb on + strand at 4374.453 kb on - strand at 4374.453 kb on - strand at 4374.453 kb on - strand at 4374.505 kb on + strand at 4374.506 kb on - strand at 4374.697 kb on + strand at 4374.774 kb on - strand at 4374.894 kb on + strand, within ECD_04107 at 4374.895 kb on - strand, within ECD_04107 at 4375.018 kb on - strand, within ECD_04107 at 4375.224 kb on - strand, within ECD_04107 at 4375.275 kb on - strand, within ECD_04107
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 4,371,326 - +1.0 4,371,426 + -0.4 4,371,476 + -0.2 4,371,489 - -0.8 4,371,539 + -0.0 4,371,539 + +0.0 4,371,539 + +0.2 4,371,539 + -0.2 4,371,685 - ECD_04105 0.31 +0.3 4,371,685 - ECD_04105 0.31 -0.9 4,371,739 + ECD_04105 0.43 +0.3 4,371,816 + ECD_04105 0.59 -0.2 4,371,841 - ECD_04105 0.65 -1.1 4,371,864 + ECD_04105 0.69 -0.0 4,371,864 + ECD_04105 0.69 +0.3 4,371,865 - ECD_04105 0.70 +0.4 4,371,865 - ECD_04105 0.70 -1.5 4,371,865 - ECD_04105 0.70 +0.2 4,371,905 + ECD_04105 0.78 -0.0 4,371,905 + ECD_04105 0.78 +0.2 4,371,905 + ECD_04105 0.78 +0.0 4,371,906 - ECD_04105 0.78 +0.0 4,371,906 - ECD_04105 0.78 +0.1 4,371,906 - ECD_04105 0.78 -1.2 4,371,989 + -0.1 4,371,990 - +0.6 4,371,990 - +0.3 4,372,035 - -0.2 4,372,035 - -0.1 4,372,090 - -0.6 4,372,117 + -0.9 4,372,153 + +0.6 4,372,170 + -0.1 4,372,171 - +0.0 4,372,220 + -0.7 4,372,220 + +0.6 4,372,229 + -0.4 4,372,254 + +0.3 4,372,255 - +0.3 4,372,388 + ECD_04106 0.10 +0.4 4,372,388 + ECD_04106 0.10 +0.5 4,372,388 + ECD_04106 0.10 +0.3 4,372,389 - ECD_04106 0.11 +0.2 4,372,402 + ECD_04106 0.11 +0.9 4,372,403 - ECD_04106 0.11 +0.2 4,372,408 - ECD_04106 0.11 -0.1 4,372,417 + ECD_04106 0.12 -0.9 4,372,418 - ECD_04106 0.12 +0.9 4,372,423 + ECD_04106 0.12 -0.5 4,372,424 - ECD_04106 0.12 +0.4 4,372,585 + ECD_04106 0.20 +1.4 4,372,585 + ECD_04106 0.20 +0.5 4,372,586 - ECD_04106 0.20 +0.8 4,372,586 - ECD_04106 0.20 -0.2 4,372,752 - ECD_04106 0.27 -0.7 4,372,780 + ECD_04106 0.29 -0.8 4,372,845 - ECD_04106 0.32 +0.4 4,372,900 - ECD_04106 0.34 -0.6 4,372,919 + ECD_04106 0.35 -0.2 4,372,919 + ECD_04106 0.35 +1.3 4,372,921 + ECD_04106 0.35 +0.4 4,372,922 - ECD_04106 0.35 +0.8 4,372,922 - ECD_04106 0.35 +0.5 4,372,985 + ECD_04106 0.38 -0.1 4,373,058 - ECD_04106 0.42 -0.5 4,373,094 - ECD_04106 0.43 +0.1 4,373,190 + ECD_04106 0.48 +0.6 4,373,219 - ECD_04106 0.49 -0.5 4,373,264 - ECD_04106 0.51 -0.3 4,373,430 + ECD_04106 0.59 -0.2 4,373,469 + ECD_04106 0.61 +1.1 4,373,470 - ECD_04106 0.61 -0.3 4,373,501 - ECD_04106 0.63 +1.1 4,373,525 + ECD_04106 0.64 -0.3 4,373,645 - ECD_04106 0.69 +0.3 4,373,649 - ECD_04106 0.69 +0.3 4,373,649 - ECD_04106 0.69 -1.4 4,373,649 - ECD_04106 0.69 -0.2 4,373,738 + ECD_04106 0.74 -0.6 4,373,739 - ECD_04106 0.74 +0.2 4,373,885 - ECD_04106 0.80 +0.3 4,374,062 - ECD_04106 0.89 +1.8 4,374,083 - ECD_04106 0.90 +0.1 4,374,083 - ECD_04106 0.90 -0.6 4,374,218 + +0.2 4,374,442 + -0.4 4,374,442 + -0.2 4,374,452 + -0.7 4,374,453 - -0.2 4,374,453 - -0.1 4,374,453 - +0.0 4,374,505 + -0.2 4,374,506 - -0.1 4,374,697 + -1.3 4,374,774 - -1.0 4,374,894 + ECD_04107 0.12 -1.5 4,374,895 - ECD_04107 0.12 +0.7 4,375,018 - ECD_04107 0.19 +1.5 4,375,224 - ECD_04107 0.32 -1.0 4,375,275 - ECD_04107 0.35 -0.5
Or see this region's nucleotide sequence