Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03963 and ECD_03964 are separated by 146 nucleotides ECD_03964 and ECD_03965 are separated by 1 nucleotides ECD_03965 and ECD_03966 overlap by 14 nucleotides ECD_03966 and ECD_03967 overlap by 1 nucleotides
ECD_03963: ECD_03963 - putative periplasmic protein, at 4,221,055 to 4,221,384
_03963
ECD_03964: ECD_03964 - 5-phospho-alpha-D-ribosyl 1,2-cyclic phosphate phosphodiesterase, at 4,221,531 to 4,222,289
_03964
ECD_03965: ECD_03965 - aminoalkylphosphonate N-acetyltransferase, at 4,222,291 to 4,222,725
_03965
ECD_03966: ECD_03966 - ribose 1,5-bisphosphokinase, at 4,222,712 to 4,223,269
_03966
ECD_03967: ECD_03967 - ribophosphonate triphosphate hydrolase, at 4,223,269 to 4,224,405
_03967
Position (kb)
4222
4223 Strain fitness (log2 ratio)
-1
0
1 at 4221.374 kb on - strand at 4221.374 kb on - strand at 4221.624 kb on - strand, within ECD_03964 at 4222.055 kb on + strand, within ECD_03964 at 4222.056 kb on - strand, within ECD_03964 at 4222.056 kb on - strand, within ECD_03964 at 4222.056 kb on - strand, within ECD_03964 at 4222.152 kb on - strand, within ECD_03964 at 4222.162 kb on - strand, within ECD_03964 at 4222.293 kb on - strand at 4222.293 kb on - strand at 4222.474 kb on + strand, within ECD_03965 at 4222.691 kb on + strand at 4222.692 kb on - strand at 4222.820 kb on - strand, within ECD_03966 at 4222.820 kb on - strand, within ECD_03966 at 4222.820 kb on - strand, within ECD_03966 at 4223.041 kb on - strand, within ECD_03966 at 4223.044 kb on - strand, within ECD_03966 at 4223.313 kb on + strand at 4223.313 kb on + strand at 4223.313 kb on + strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.314 kb on - strand at 4223.501 kb on + strand, within ECD_03967
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 4,221,374 - +0.1 4,221,374 - -1.2 4,221,624 - ECD_03964 0.12 +0.6 4,222,055 + ECD_03964 0.69 +0.4 4,222,056 - ECD_03964 0.69 +0.6 4,222,056 - ECD_03964 0.69 +0.1 4,222,056 - ECD_03964 0.69 +0.5 4,222,152 - ECD_03964 0.82 +0.3 4,222,162 - ECD_03964 0.83 +0.4 4,222,293 - +0.0 4,222,293 - -0.5 4,222,474 + ECD_03965 0.42 +0.2 4,222,691 + +0.1 4,222,692 - +0.6 4,222,820 - ECD_03966 0.19 -0.6 4,222,820 - ECD_03966 0.19 -0.5 4,222,820 - ECD_03966 0.19 +0.5 4,223,041 - ECD_03966 0.59 -0.9 4,223,044 - ECD_03966 0.59 -0.4 4,223,313 + -0.1 4,223,313 + +1.2 4,223,313 + +0.9 4,223,314 - -0.0 4,223,314 - +0.1 4,223,314 - -0.7 4,223,314 - -0.4 4,223,314 - +0.1 4,223,501 + ECD_03967 0.20 -0.8
Or see this region's nucleotide sequence