Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03714 and ECD_03715 are separated by 94 nucleotides ECD_03715 and ECD_03716 are separated by 5 nucleotides ECD_03716 and ECD_03717 are separated by 256 nucleotides
ECD_03714: ECD_03714 - hypothetical protein, at 3,913,274 to 3,914,833
_03714
ECD_03715: ECD_03715 - hypothetical protein, at 3,914,928 to 3,915,788
_03715
ECD_03716: ECD_03716 - hypothetical protein, at 3,915,794 to 3,916,462
_03716
ECD_03717: ECD_03717 - putative carboxymethylenebutenolidase, at 3,916,719 to 3,917,528
_03717
Position (kb)
3915
3916
3917 Strain fitness (log2 ratio)
-1
0
1
2 at 3914.839 kb on + strand at 3914.891 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.982 kb on + strand at 3914.983 kb on - strand at 3914.983 kb on - strand at 3915.070 kb on - strand, within ECD_03715 at 3915.118 kb on + strand, within ECD_03715 at 3915.118 kb on + strand, within ECD_03715 at 3915.233 kb on - strand, within ECD_03715 at 3915.244 kb on + strand, within ECD_03715 at 3915.244 kb on + strand, within ECD_03715 at 3915.245 kb on - strand, within ECD_03715 at 3915.245 kb on - strand, within ECD_03715 at 3915.273 kb on - strand, within ECD_03715 at 3915.333 kb on + strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.384 kb on - strand, within ECD_03715 at 3915.550 kb on - strand, within ECD_03715 at 3915.637 kb on + strand, within ECD_03715 at 3915.638 kb on - strand, within ECD_03715 at 3915.638 kb on - strand, within ECD_03715 at 3915.690 kb on + strand, within ECD_03715 at 3915.691 kb on - strand, within ECD_03715 at 3915.702 kb on - strand, within ECD_03715 at 3915.710 kb on + strand at 3915.711 kb on - strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.720 kb on + strand at 3915.783 kb on + strand at 3915.814 kb on + strand at 3915.880 kb on - strand, within ECD_03716 at 3915.937 kb on - strand, within ECD_03716 at 3915.937 kb on - strand, within ECD_03716 at 3915.988 kb on + strand, within ECD_03716 at 3915.988 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.001 kb on + strand, within ECD_03716 at 3916.002 kb on - strand, within ECD_03716 at 3916.040 kb on + strand, within ECD_03716 at 3916.040 kb on + strand, within ECD_03716 at 3916.041 kb on - strand, within ECD_03716 at 3916.041 kb on - strand, within ECD_03716 at 3916.054 kb on - strand, within ECD_03716 at 3916.054 kb on - strand, within ECD_03716 at 3916.076 kb on - strand, within ECD_03716 at 3916.224 kb on - strand, within ECD_03716 at 3916.224 kb on - strand, within ECD_03716 at 3916.255 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.261 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.297 kb on + strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.298 kb on - strand, within ECD_03716 at 3916.320 kb on - strand, within ECD_03716 at 3916.465 kb on + strand at 3916.465 kb on + strand at 3916.692 kb on + strand at 3916.692 kb on + strand at 3916.712 kb on + strand at 3916.712 kb on + strand at 3916.727 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.735 kb on + strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.736 kb on - strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.792 kb on + strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.793 kb on - strand at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.930 kb on + strand, within ECD_03717 at 3916.931 kb on - strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.932 kb on + strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3916.933 kb on - strand, within ECD_03717 at 3917.001 kb on - strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.040 kb on + strand, within ECD_03717 at 3917.041 kb on - strand, within ECD_03717 at 3917.062 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.075 kb on + strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.076 kb on - strand, within ECD_03717 at 3917.106 kb on + strand, within ECD_03717 at 3917.107 kb on - strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.254 kb on + strand, within ECD_03717 at 3917.316 kb on - strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.346 kb on + strand, within ECD_03717 at 3917.347 kb on - strand, within ECD_03717
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 3,914,839 + +0.3 3,914,891 + +1.0 3,914,982 + +0.2 3,914,982 + +0.3 3,914,982 + +0.1 3,914,982 + +0.5 3,914,983 - +1.3 3,914,983 - -1.2 3,915,070 - ECD_03715 0.16 +0.5 3,915,118 + ECD_03715 0.22 +0.3 3,915,118 + ECD_03715 0.22 +0.6 3,915,233 - ECD_03715 0.35 +0.5 3,915,244 + ECD_03715 0.37 -1.2 3,915,244 + ECD_03715 0.37 +1.2 3,915,245 - ECD_03715 0.37 +0.1 3,915,245 - ECD_03715 0.37 -0.1 3,915,273 - ECD_03715 0.40 -0.3 3,915,333 + ECD_03715 0.47 -0.2 3,915,384 - ECD_03715 0.53 +0.9 3,915,384 - ECD_03715 0.53 -0.4 3,915,384 - ECD_03715 0.53 +0.0 3,915,384 - ECD_03715 0.53 +0.0 3,915,550 - ECD_03715 0.72 +0.4 3,915,637 + ECD_03715 0.82 -0.7 3,915,638 - ECD_03715 0.82 +0.7 3,915,638 - ECD_03715 0.82 -0.4 3,915,690 + ECD_03715 0.89 +2.1 3,915,691 - ECD_03715 0.89 +0.1 3,915,702 - ECD_03715 0.90 +0.6 3,915,710 + +0.7 3,915,711 - -0.0 3,915,720 + +0.1 3,915,720 + -0.5 3,915,720 + +1.0 3,915,783 + +0.6 3,915,814 + -0.1 3,915,880 - ECD_03716 0.13 -0.1 3,915,937 - ECD_03716 0.21 -1.0 3,915,937 - ECD_03716 0.21 -0.4 3,915,988 + ECD_03716 0.29 -0.9 3,915,988 + ECD_03716 0.29 -0.1 3,916,001 + ECD_03716 0.31 +0.4 3,916,001 + ECD_03716 0.31 -0.1 3,916,001 + ECD_03716 0.31 +0.3 3,916,002 - ECD_03716 0.31 -0.7 3,916,040 + ECD_03716 0.37 -1.1 3,916,040 + ECD_03716 0.37 +0.3 3,916,041 - ECD_03716 0.37 -0.1 3,916,041 - ECD_03716 0.37 -1.3 3,916,054 - ECD_03716 0.39 -0.7 3,916,054 - ECD_03716 0.39 +0.0 3,916,076 - ECD_03716 0.42 +0.2 3,916,224 - ECD_03716 0.64 -0.1 3,916,224 - ECD_03716 0.64 -1.5 3,916,255 + ECD_03716 0.69 -0.3 3,916,261 + ECD_03716 0.70 +0.1 3,916,261 + ECD_03716 0.70 -0.5 3,916,261 + ECD_03716 0.70 -1.0 3,916,261 + ECD_03716 0.70 -0.2 3,916,297 + ECD_03716 0.75 +1.7 3,916,297 + ECD_03716 0.75 +0.4 3,916,297 + ECD_03716 0.75 -0.7 3,916,298 - ECD_03716 0.75 +0.7 3,916,298 - ECD_03716 0.75 +0.1 3,916,298 - ECD_03716 0.75 +0.6 3,916,298 - ECD_03716 0.75 +0.4 3,916,320 - ECD_03716 0.79 +0.4 3,916,465 + -0.2 3,916,465 + -1.2 3,916,692 + -0.5 3,916,692 + +0.3 3,916,712 + -0.5 3,916,712 + +0.3 3,916,727 + +0.8 3,916,735 + -0.7 3,916,735 + +0.5 3,916,735 + +0.3 3,916,735 + +0.3 3,916,735 + +0.3 3,916,735 + +0.6 3,916,735 + -0.4 3,916,735 + -0.7 3,916,736 - -0.4 3,916,736 - -0.1 3,916,736 - +0.4 3,916,736 - -0.8 3,916,736 - +0.9 3,916,736 - +0.2 3,916,792 + -0.1 3,916,792 + -0.4 3,916,792 + +0.1 3,916,793 - +0.2 3,916,793 - +0.7 3,916,793 - -0.1 3,916,793 - -0.0 3,916,793 - +0.2 3,916,793 - -0.5 3,916,930 + ECD_03717 0.26 +0.5 3,916,930 + ECD_03717 0.26 +0.2 3,916,930 + ECD_03717 0.26 -1.1 3,916,931 - ECD_03717 0.26 +0.1 3,916,932 + ECD_03717 0.26 +0.6 3,916,932 + ECD_03717 0.26 -0.1 3,916,932 + ECD_03717 0.26 -0.1 3,916,932 + ECD_03717 0.26 -1.4 3,916,933 - ECD_03717 0.26 +0.5 3,916,933 - ECD_03717 0.26 -0.6 3,917,001 - ECD_03717 0.35 +0.5 3,917,040 + ECD_03717 0.40 -1.3 3,917,040 + ECD_03717 0.40 +0.0 3,917,040 + ECD_03717 0.40 +0.3 3,917,041 - ECD_03717 0.40 +0.6 3,917,062 + ECD_03717 0.42 -0.9 3,917,075 + ECD_03717 0.44 +0.1 3,917,075 + ECD_03717 0.44 -0.7 3,917,076 - ECD_03717 0.44 -0.1 3,917,076 - ECD_03717 0.44 +0.4 3,917,106 + ECD_03717 0.48 +0.8 3,917,107 - ECD_03717 0.48 -1.4 3,917,254 + ECD_03717 0.66 +0.5 3,917,254 + ECD_03717 0.66 -0.1 3,917,316 - ECD_03717 0.74 +0.6 3,917,346 + ECD_03717 0.77 -0.2 3,917,346 + ECD_03717 0.77 -0.0 3,917,347 - ECD_03717 0.78 -1.4
Or see this region's nucleotide sequence