Strain Fitness in Escherichia coli BL21 around ECD_03507

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03505 and ECD_03506 are separated by 54 nucleotidesECD_03506 and ECD_03507 are separated by 18 nucleotidesECD_03507 and ECD_03508 are separated by 6 nucleotidesECD_03508 and ECD_03509 are separated by 5 nucleotides ECD_03505: ECD_03505 - guanylate kinase, at 3,688,220 to 3,688,843 _03505 ECD_03506: ECD_03506 - RNA polymerase, omega subunit, at 3,688,898 to 3,689,173 _03506 ECD_03507: ECD_03507 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase, at 3,689,192 to 3,691,300 _03507 ECD_03508: ECD_03508 - tRNA mG18-2'-O-methyltransferase, SAM-dependent, at 3,691,307 to 3,691,996 _03508 ECD_03509: ECD_03509 - ATP-dependent DNA helicase, at 3,692,002 to 3,694,083 _03509 Position (kb) 3689 3690 3691 3692Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3688.206 kb on + strandat 3688.893 kb on + strandat 3688.893 kb on + strandat 3688.897 kb on + strandat 3688.908 kb on + strandat 3689.040 kb on + strand, within ECD_03506at 3689.040 kb on + strand, within ECD_03506at 3689.152 kb on + strandat 3690.356 kb on + strand, within ECD_03507at 3690.356 kb on + strand, within ECD_03507at 3690.871 kb on + strand, within ECD_03507at 3690.872 kb on - strand, within ECD_03507at 3691.027 kb on + strand, within ECD_03507at 3691.027 kb on + strand, within ECD_03507at 3691.132 kb on + strandat 3691.150 kb on + strandat 3691.165 kb on + strandat 3691.190 kb on + strandat 3691.276 kb on + strandat 3691.277 kb on - strandat 3691.306 kb on + strandat 3691.306 kb on + strandat 3691.306 kb on + strandat 3691.306 kb on + strandat 3691.307 kb on - strandat 3691.440 kb on + strand, within ECD_03508at 3691.440 kb on + strand, within ECD_03508at 3691.508 kb on - strand, within ECD_03508at 3691.817 kb on + strand, within ECD_03508at 3691.975 kb on + strandat 3691.978 kb on + strandat 3691.979 kb on - strandat 3691.979 kb on - strandat 3691.994 kb on + strandat 3691.994 kb on + strandat 3692.018 kb on + strandat 3692.018 kb on + strandat 3692.064 kb on + strandat 3692.064 kb on + strandat 3692.065 kb on - strandat 3692.114 kb on + strandat 3692.115 kb on - strandat 3692.168 kb on + strandat 3692.168 kb on + strandat 3692.169 kb on - strandat 3692.182 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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3,688,206 + -0.0
3,688,893 + +0.0
3,688,893 + +0.7
3,688,897 + -0.4
3,688,908 + -0.3
3,689,040 + ECD_03506 0.51 -0.4
3,689,040 + ECD_03506 0.51 -1.7
3,689,152 + +0.8
3,690,356 + ECD_03507 0.55 -0.1
3,690,356 + ECD_03507 0.55 -3.2
3,690,871 + ECD_03507 0.80 -0.0
3,690,872 - ECD_03507 0.80 -0.4
3,691,027 + ECD_03507 0.87 -0.1
3,691,027 + ECD_03507 0.87 -0.1
3,691,132 + -0.5
3,691,150 + -0.8
3,691,165 + +0.0
3,691,190 + -0.8
3,691,276 + +0.6
3,691,277 - +0.6
3,691,306 + +1.4
3,691,306 + +0.4
3,691,306 + -0.0
3,691,306 + +0.1
3,691,307 - +0.1
3,691,440 + ECD_03508 0.19 -0.5
3,691,440 + ECD_03508 0.19 +0.8
3,691,508 - ECD_03508 0.29 +1.0
3,691,817 + ECD_03508 0.74 +1.8
3,691,975 + -0.5
3,691,978 + +0.8
3,691,979 - +1.0
3,691,979 - -0.9
3,691,994 + +0.8
3,691,994 + +0.2
3,692,018 + -1.5
3,692,018 + +0.2
3,692,064 + -0.3
3,692,064 + -1.2
3,692,065 - -1.3
3,692,114 + -1.1
3,692,115 - -0.2
3,692,168 + +0.5
3,692,168 + -1.0
3,692,169 - -0.2
3,692,182 + -0.7

Or see this region's nucleotide sequence