Strain Fitness in Escherichia coli BL21 around ECD_03376

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03375 and ECD_03376 are separated by 220 nucleotidesECD_03376 and ECD_03377 are separated by 182 nucleotides ECD_03375: ECD_03375 - putative periplasmic M16 family chaperone, at 3,541,632 to 3,543,128 _03375 ECD_03376: ECD_03376 - C4-dicarboxylic acid, orotate and citrate transporter, at 3,543,349 to 3,544,635 _03376 ECD_03377: ECD_03377 - cyclic-di-GMP phosphodiesterase, at 3,544,818 to 3,546,767 _03377 Position (kb) 3543 3544 3545Strain fitness (log2 ratio) -3 -2 -1 0 1at 3542.424 kb on + strand, within ECD_03375at 3542.492 kb on - strand, within ECD_03375at 3542.492 kb on - strand, within ECD_03375at 3542.566 kb on - strand, within ECD_03375at 3542.566 kb on - strand, within ECD_03375at 3542.566 kb on - strand, within ECD_03375at 3542.610 kb on - strand, within ECD_03375at 3542.610 kb on - strand, within ECD_03375at 3542.610 kb on - strand, within ECD_03375at 3542.760 kb on - strand, within ECD_03375at 3542.777 kb on - strand, within ECD_03375at 3542.787 kb on + strand, within ECD_03375at 3542.788 kb on - strand, within ECD_03375at 3542.879 kb on + strand, within ECD_03375at 3542.916 kb on - strand, within ECD_03375at 3542.937 kb on - strand, within ECD_03375at 3542.940 kb on - strand, within ECD_03375at 3543.003 kb on + strandat 3543.067 kb on + strandat 3543.068 kb on - strandat 3543.068 kb on - strandat 3543.146 kb on + strandat 3543.186 kb on - strandat 3543.195 kb on + strandat 3543.251 kb on + strandat 3543.274 kb on + strandat 3543.275 kb on - strandat 3543.297 kb on + strandat 3543.338 kb on - strandat 3543.338 kb on - strandat 3543.338 kb on - strandat 3543.358 kb on + strandat 3543.358 kb on + strandat 3543.359 kb on - strandat 3543.438 kb on + strandat 3543.439 kb on - strandat 3543.439 kb on - strandat 3543.439 kb on - strandat 3543.439 kb on - strandat 3543.457 kb on + strandat 3543.502 kb on - strand, within ECD_03376at 3543.502 kb on - strand, within ECD_03376at 3543.615 kb on + strand, within ECD_03376at 3543.615 kb on + strand, within ECD_03376at 3543.616 kb on - strand, within ECD_03376at 3543.637 kb on + strand, within ECD_03376at 3543.713 kb on + strand, within ECD_03376at 3543.713 kb on + strand, within ECD_03376at 3543.713 kb on + strand, within ECD_03376at 3543.714 kb on - strand, within ECD_03376at 3543.715 kb on + strand, within ECD_03376at 3543.716 kb on - strand, within ECD_03376at 3543.716 kb on - strand, within ECD_03376at 3543.778 kb on - strand, within ECD_03376at 3543.892 kb on - strand, within ECD_03376at 3543.926 kb on - strand, within ECD_03376at 3543.945 kb on + strand, within ECD_03376at 3543.951 kb on + strand, within ECD_03376at 3543.951 kb on + strand, within ECD_03376at 3543.951 kb on + strand, within ECD_03376at 3543.952 kb on - strand, within ECD_03376at 3543.952 kb on - strand, within ECD_03376at 3543.956 kb on + strand, within ECD_03376at 3543.966 kb on + strand, within ECD_03376at 3544.017 kb on + strand, within ECD_03376at 3544.017 kb on + strand, within ECD_03376at 3544.044 kb on + strand, within ECD_03376at 3544.044 kb on + strand, within ECD_03376at 3544.045 kb on - strand, within ECD_03376at 3544.065 kb on + strand, within ECD_03376at 3544.066 kb on - strand, within ECD_03376at 3544.192 kb on - strand, within ECD_03376at 3544.356 kb on + strand, within ECD_03376at 3544.356 kb on + strand, within ECD_03376at 3544.356 kb on + strand, within ECD_03376at 3544.357 kb on - strand, within ECD_03376at 3544.365 kb on + strand, within ECD_03376at 3544.380 kb on + strand, within ECD_03376at 3544.380 kb on + strand, within ECD_03376at 3544.397 kb on + strand, within ECD_03376at 3544.397 kb on + strand, within ECD_03376at 3544.398 kb on - strand, within ECD_03376at 3544.500 kb on + strand, within ECD_03376at 3544.501 kb on - strand, within ECD_03376at 3544.556 kb on + strandat 3544.575 kb on + strandat 3544.576 kb on - strandat 3544.635 kb on + strandat 3544.693 kb on - strandat 3544.802 kb on - strandat 3544.819 kb on + strandat 3544.893 kb on - strandat 3544.959 kb on + strandat 3544.986 kb on - strandat 3545.049 kb on + strand, within ECD_03377at 3545.186 kb on + strand, within ECD_03377at 3545.186 kb on + strand, within ECD_03377at 3545.259 kb on - strand, within ECD_03377at 3545.270 kb on + strand, within ECD_03377at 3545.270 kb on + strand, within ECD_03377at 3545.271 kb on - strand, within ECD_03377at 3545.322 kb on - strand, within ECD_03377at 3545.322 kb on - strand, within ECD_03377at 3545.470 kb on - strand, within ECD_03377at 3545.555 kb on + strand, within ECD_03377

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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3,542,424 + ECD_03375 0.53 +0.2
3,542,492 - ECD_03375 0.57 +0.3
3,542,492 - ECD_03375 0.57 +0.6
3,542,566 - ECD_03375 0.62 +0.7
3,542,566 - ECD_03375 0.62 -0.6
3,542,566 - ECD_03375 0.62 +0.3
3,542,610 - ECD_03375 0.65 -0.7
3,542,610 - ECD_03375 0.65 +0.1
3,542,610 - ECD_03375 0.65 -0.3
3,542,760 - ECD_03375 0.75 -0.1
3,542,777 - ECD_03375 0.76 +0.4
3,542,787 + ECD_03375 0.77 +0.5
3,542,788 - ECD_03375 0.77 -0.1
3,542,879 + ECD_03375 0.83 -0.3
3,542,916 - ECD_03375 0.86 -0.0
3,542,937 - ECD_03375 0.87 -0.3
3,542,940 - ECD_03375 0.87 +1.0
3,543,003 + -0.7
3,543,067 + +0.2
3,543,068 - +0.1
3,543,068 - -0.1
3,543,146 + -0.1
3,543,186 - +1.4
3,543,195 + +0.2
3,543,251 + -0.3
3,543,274 + +0.0
3,543,275 - -1.4
3,543,297 + +0.1
3,543,338 - -0.4
3,543,338 - -0.9
3,543,338 - -0.0
3,543,358 + -0.2
3,543,358 + -0.1
3,543,359 - +0.4
3,543,438 + -0.7
3,543,439 - -0.2
3,543,439 - -0.0
3,543,439 - -0.1
3,543,439 - +0.1
3,543,457 + -1.4
3,543,502 - ECD_03376 0.12 +0.0
3,543,502 - ECD_03376 0.12 -0.8
3,543,615 + ECD_03376 0.21 -0.2
3,543,615 + ECD_03376 0.21 +0.6
3,543,616 - ECD_03376 0.21 -0.4
3,543,637 + ECD_03376 0.22 -0.3
3,543,713 + ECD_03376 0.28 +1.0
3,543,713 + ECD_03376 0.28 +0.4
3,543,713 + ECD_03376 0.28 -0.3
3,543,714 - ECD_03376 0.28 -0.8
3,543,715 + ECD_03376 0.28 -0.9
3,543,716 - ECD_03376 0.29 -0.4
3,543,716 - ECD_03376 0.29 -0.5
3,543,778 - ECD_03376 0.33 +0.1
3,543,892 - ECD_03376 0.42 +0.4
3,543,926 - ECD_03376 0.45 -0.1
3,543,945 + ECD_03376 0.46 -0.6
3,543,951 + ECD_03376 0.47 -2.2
3,543,951 + ECD_03376 0.47 -0.6
3,543,951 + ECD_03376 0.47 -1.2
3,543,952 - ECD_03376 0.47 +0.8
3,543,952 - ECD_03376 0.47 -0.3
3,543,956 + ECD_03376 0.47 -1.6
3,543,966 + ECD_03376 0.48 +0.1
3,544,017 + ECD_03376 0.52 -0.6
3,544,017 + ECD_03376 0.52 +0.3
3,544,044 + ECD_03376 0.54 -0.2
3,544,044 + ECD_03376 0.54 -0.4
3,544,045 - ECD_03376 0.54 -1.0
3,544,065 + ECD_03376 0.56 +0.2
3,544,066 - ECD_03376 0.56 -0.6
3,544,192 - ECD_03376 0.66 -0.7
3,544,356 + ECD_03376 0.78 -0.3
3,544,356 + ECD_03376 0.78 -2.8
3,544,356 + ECD_03376 0.78 -0.3
3,544,357 - ECD_03376 0.78 +0.5
3,544,365 + ECD_03376 0.79 +0.7
3,544,380 + ECD_03376 0.80 -0.4
3,544,380 + ECD_03376 0.80 -1.3
3,544,397 + ECD_03376 0.81 +0.1
3,544,397 + ECD_03376 0.81 +0.3
3,544,398 - ECD_03376 0.82 -0.3
3,544,500 + ECD_03376 0.89 +0.4
3,544,501 - ECD_03376 0.90 -0.6
3,544,556 + -0.5
3,544,575 + -0.0
3,544,576 - -0.5
3,544,635 + -0.2
3,544,693 - -0.2
3,544,802 - +0.1
3,544,819 + -0.7
3,544,893 - +0.3
3,544,959 + -0.3
3,544,986 - +0.0
3,545,049 + ECD_03377 0.12 -0.9
3,545,186 + ECD_03377 0.19 -0.6
3,545,186 + ECD_03377 0.19 -0.8
3,545,259 - ECD_03377 0.23 +0.4
3,545,270 + ECD_03377 0.23 -0.6
3,545,270 + ECD_03377 0.23 +0.1
3,545,271 - ECD_03377 0.23 +0.9
3,545,322 - ECD_03377 0.26 -0.6
3,545,322 - ECD_03377 0.26 -0.3
3,545,470 - ECD_03377 0.33 -0.3
3,545,555 + ECD_03377 0.38 -0.1

Or see this region's nucleotide sequence