Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03375 and ECD_03376 are separated by 220 nucleotides ECD_03376 and ECD_03377 are separated by 182 nucleotides
ECD_03375: ECD_03375 - putative periplasmic M16 family chaperone, at 3,541,632 to 3,543,128
_03375
ECD_03376: ECD_03376 - C4-dicarboxylic acid, orotate and citrate transporter, at 3,543,349 to 3,544,635
_03376
ECD_03377: ECD_03377 - cyclic-di-GMP phosphodiesterase, at 3,544,818 to 3,546,767
_03377
Position (kb)
3543
3544
3545 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3542.424 kb on + strand, within ECD_03375 at 3542.492 kb on - strand, within ECD_03375 at 3542.492 kb on - strand, within ECD_03375 at 3542.566 kb on - strand, within ECD_03375 at 3542.566 kb on - strand, within ECD_03375 at 3542.566 kb on - strand, within ECD_03375 at 3542.610 kb on - strand, within ECD_03375 at 3542.610 kb on - strand, within ECD_03375 at 3542.610 kb on - strand, within ECD_03375 at 3542.760 kb on - strand, within ECD_03375 at 3542.777 kb on - strand, within ECD_03375 at 3542.787 kb on + strand, within ECD_03375 at 3542.788 kb on - strand, within ECD_03375 at 3542.879 kb on + strand, within ECD_03375 at 3542.916 kb on - strand, within ECD_03375 at 3542.937 kb on - strand, within ECD_03375 at 3542.940 kb on - strand, within ECD_03375 at 3543.003 kb on + strand at 3543.067 kb on + strand at 3543.068 kb on - strand at 3543.068 kb on - strand at 3543.146 kb on + strand at 3543.186 kb on - strand at 3543.195 kb on + strand at 3543.251 kb on + strand at 3543.274 kb on + strand at 3543.275 kb on - strand at 3543.297 kb on + strand at 3543.338 kb on - strand at 3543.338 kb on - strand at 3543.338 kb on - strand at 3543.358 kb on + strand at 3543.358 kb on + strand at 3543.359 kb on - strand at 3543.438 kb on + strand at 3543.439 kb on - strand at 3543.439 kb on - strand at 3543.439 kb on - strand at 3543.439 kb on - strand at 3543.457 kb on + strand at 3543.502 kb on - strand, within ECD_03376 at 3543.502 kb on - strand, within ECD_03376 at 3543.615 kb on + strand, within ECD_03376 at 3543.615 kb on + strand, within ECD_03376 at 3543.616 kb on - strand, within ECD_03376 at 3543.637 kb on + strand, within ECD_03376 at 3543.713 kb on + strand, within ECD_03376 at 3543.713 kb on + strand, within ECD_03376 at 3543.713 kb on + strand, within ECD_03376 at 3543.714 kb on - strand, within ECD_03376 at 3543.715 kb on + strand, within ECD_03376 at 3543.716 kb on - strand, within ECD_03376 at 3543.716 kb on - strand, within ECD_03376 at 3543.778 kb on - strand, within ECD_03376 at 3543.892 kb on - strand, within ECD_03376 at 3543.926 kb on - strand, within ECD_03376 at 3543.945 kb on + strand, within ECD_03376 at 3543.951 kb on + strand, within ECD_03376 at 3543.951 kb on + strand, within ECD_03376 at 3543.951 kb on + strand, within ECD_03376 at 3543.952 kb on - strand, within ECD_03376 at 3543.952 kb on - strand, within ECD_03376 at 3543.956 kb on + strand, within ECD_03376 at 3543.966 kb on + strand, within ECD_03376 at 3544.017 kb on + strand, within ECD_03376 at 3544.017 kb on + strand, within ECD_03376 at 3544.044 kb on + strand, within ECD_03376 at 3544.044 kb on + strand, within ECD_03376 at 3544.045 kb on - strand, within ECD_03376 at 3544.065 kb on + strand, within ECD_03376 at 3544.066 kb on - strand, within ECD_03376 at 3544.192 kb on - strand, within ECD_03376 at 3544.356 kb on + strand, within ECD_03376 at 3544.356 kb on + strand, within ECD_03376 at 3544.356 kb on + strand, within ECD_03376 at 3544.357 kb on - strand, within ECD_03376 at 3544.365 kb on + strand, within ECD_03376 at 3544.380 kb on + strand, within ECD_03376 at 3544.380 kb on + strand, within ECD_03376 at 3544.397 kb on + strand, within ECD_03376 at 3544.397 kb on + strand, within ECD_03376 at 3544.398 kb on - strand, within ECD_03376 at 3544.500 kb on + strand, within ECD_03376 at 3544.501 kb on - strand, within ECD_03376 at 3544.556 kb on + strand at 3544.575 kb on + strand at 3544.576 kb on - strand at 3544.635 kb on + strand at 3544.693 kb on - strand at 3544.802 kb on - strand at 3544.819 kb on + strand at 3544.893 kb on - strand at 3544.959 kb on + strand at 3544.986 kb on - strand at 3545.049 kb on + strand, within ECD_03377 at 3545.186 kb on + strand, within ECD_03377 at 3545.186 kb on + strand, within ECD_03377 at 3545.259 kb on - strand, within ECD_03377 at 3545.270 kb on + strand, within ECD_03377 at 3545.270 kb on + strand, within ECD_03377 at 3545.271 kb on - strand, within ECD_03377 at 3545.322 kb on - strand, within ECD_03377 at 3545.322 kb on - strand, within ECD_03377 at 3545.470 kb on - strand, within ECD_03377 at 3545.555 kb on + strand, within ECD_03377
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 3,542,424 + ECD_03375 0.53 +0.2 3,542,492 - ECD_03375 0.57 +0.3 3,542,492 - ECD_03375 0.57 +0.6 3,542,566 - ECD_03375 0.62 +0.7 3,542,566 - ECD_03375 0.62 -0.6 3,542,566 - ECD_03375 0.62 +0.3 3,542,610 - ECD_03375 0.65 -0.7 3,542,610 - ECD_03375 0.65 +0.1 3,542,610 - ECD_03375 0.65 -0.3 3,542,760 - ECD_03375 0.75 -0.1 3,542,777 - ECD_03375 0.76 +0.4 3,542,787 + ECD_03375 0.77 +0.5 3,542,788 - ECD_03375 0.77 -0.1 3,542,879 + ECD_03375 0.83 -0.3 3,542,916 - ECD_03375 0.86 -0.0 3,542,937 - ECD_03375 0.87 -0.3 3,542,940 - ECD_03375 0.87 +1.0 3,543,003 + -0.7 3,543,067 + +0.2 3,543,068 - +0.1 3,543,068 - -0.1 3,543,146 + -0.1 3,543,186 - +1.4 3,543,195 + +0.2 3,543,251 + -0.3 3,543,274 + +0.0 3,543,275 - -1.4 3,543,297 + +0.1 3,543,338 - -0.4 3,543,338 - -0.9 3,543,338 - -0.0 3,543,358 + -0.2 3,543,358 + -0.1 3,543,359 - +0.4 3,543,438 + -0.7 3,543,439 - -0.2 3,543,439 - -0.0 3,543,439 - -0.1 3,543,439 - +0.1 3,543,457 + -1.4 3,543,502 - ECD_03376 0.12 +0.0 3,543,502 - ECD_03376 0.12 -0.8 3,543,615 + ECD_03376 0.21 -0.2 3,543,615 + ECD_03376 0.21 +0.6 3,543,616 - ECD_03376 0.21 -0.4 3,543,637 + ECD_03376 0.22 -0.3 3,543,713 + ECD_03376 0.28 +1.0 3,543,713 + ECD_03376 0.28 +0.4 3,543,713 + ECD_03376 0.28 -0.3 3,543,714 - ECD_03376 0.28 -0.8 3,543,715 + ECD_03376 0.28 -0.9 3,543,716 - ECD_03376 0.29 -0.4 3,543,716 - ECD_03376 0.29 -0.5 3,543,778 - ECD_03376 0.33 +0.1 3,543,892 - ECD_03376 0.42 +0.4 3,543,926 - ECD_03376 0.45 -0.1 3,543,945 + ECD_03376 0.46 -0.6 3,543,951 + ECD_03376 0.47 -2.2 3,543,951 + ECD_03376 0.47 -0.6 3,543,951 + ECD_03376 0.47 -1.2 3,543,952 - ECD_03376 0.47 +0.8 3,543,952 - ECD_03376 0.47 -0.3 3,543,956 + ECD_03376 0.47 -1.6 3,543,966 + ECD_03376 0.48 +0.1 3,544,017 + ECD_03376 0.52 -0.6 3,544,017 + ECD_03376 0.52 +0.3 3,544,044 + ECD_03376 0.54 -0.2 3,544,044 + ECD_03376 0.54 -0.4 3,544,045 - ECD_03376 0.54 -1.0 3,544,065 + ECD_03376 0.56 +0.2 3,544,066 - ECD_03376 0.56 -0.6 3,544,192 - ECD_03376 0.66 -0.7 3,544,356 + ECD_03376 0.78 -0.3 3,544,356 + ECD_03376 0.78 -2.8 3,544,356 + ECD_03376 0.78 -0.3 3,544,357 - ECD_03376 0.78 +0.5 3,544,365 + ECD_03376 0.79 +0.7 3,544,380 + ECD_03376 0.80 -0.4 3,544,380 + ECD_03376 0.80 -1.3 3,544,397 + ECD_03376 0.81 +0.1 3,544,397 + ECD_03376 0.81 +0.3 3,544,398 - ECD_03376 0.82 -0.3 3,544,500 + ECD_03376 0.89 +0.4 3,544,501 - ECD_03376 0.90 -0.6 3,544,556 + -0.5 3,544,575 + -0.0 3,544,576 - -0.5 3,544,635 + -0.2 3,544,693 - -0.2 3,544,802 - +0.1 3,544,819 + -0.7 3,544,893 - +0.3 3,544,959 + -0.3 3,544,986 - +0.0 3,545,049 + ECD_03377 0.12 -0.9 3,545,186 + ECD_03377 0.19 -0.6 3,545,186 + ECD_03377 0.19 -0.8 3,545,259 - ECD_03377 0.23 +0.4 3,545,270 + ECD_03377 0.23 -0.6 3,545,270 + ECD_03377 0.23 +0.1 3,545,271 - ECD_03377 0.23 +0.9 3,545,322 - ECD_03377 0.26 -0.6 3,545,322 - ECD_03377 0.26 -0.3 3,545,470 - ECD_03377 0.33 -0.3 3,545,555 + ECD_03377 0.38 -0.1
Or see this region's nucleotide sequence