Strain Fitness in Escherichia coli BL21 around ECD_02163

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02161 and ECD_02162 overlap by 1 nucleotidesECD_02162 and ECD_02163 are separated by 53 nucleotidesECD_02163 and ECD_02164 are separated by 214 nucleotidesECD_02164 and ECD_02165 are separated by 41 nucleotides ECD_02161: ECD_02161 - ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein, at 2,237,753 to 2,238,883 _02161 ECD_02162: ECD_02162 - ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance, at 2,238,883 to 2,239,137 _02162 ECD_02163: ECD_02163 - acid-inducible Kdo/WaaP family putative kinase, at 2,239,191 to 2,239,841 _02163 ECD_02164: ECD_02164 - hypothetical protein, at 2,240,056 to 2,240,262 _02164 ECD_02165: ECD_02165 - periplasmic glycerophosphodiester phosphodiesterase, at 2,240,304 to 2,241,380 _02165 Position (kb) 2239 2240Strain fitness (log2 ratio) -1 0 1at 2239.071 kb on + strand, within ECD_02162at 2239.205 kb on - strandat 2239.364 kb on - strand, within ECD_02163at 2239.367 kb on + strand, within ECD_02163at 2239.368 kb on - strand, within ECD_02163at 2239.758 kb on - strand, within ECD_02163at 2239.879 kb on - strandat 2239.881 kb on - strandat 2239.881 kb on - strandat 2239.881 kb on - strandat 2240.300 kb on - strandat 2240.391 kb on + strandat 2240.392 kb on - strandat 2240.392 kb on - strandat 2240.392 kb on - strandat 2240.501 kb on + strand, within ECD_02165at 2240.535 kb on - strand, within ECD_02165at 2240.535 kb on - strand, within ECD_02165at 2240.540 kb on - strand, within ECD_02165at 2240.583 kb on - strand, within ECD_02165at 2240.609 kb on - strand, within ECD_02165at 2240.609 kb on - strand, within ECD_02165at 2240.615 kb on - strand, within ECD_02165

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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2,239,071 + ECD_02162 0.74 -0.1
2,239,205 - +0.8
2,239,364 - ECD_02163 0.27 -1.5
2,239,367 + ECD_02163 0.27 +0.9
2,239,368 - ECD_02163 0.27 -0.3
2,239,758 - ECD_02163 0.87 -0.9
2,239,879 - +0.4
2,239,881 - -0.5
2,239,881 - -0.5
2,239,881 - -0.1
2,240,300 - +0.3
2,240,391 + +0.1
2,240,392 - -0.2
2,240,392 - +0.3
2,240,392 - +1.1
2,240,501 + ECD_02165 0.18 +0.8
2,240,535 - ECD_02165 0.21 -0.7
2,240,535 - ECD_02165 0.21 -0.6
2,240,540 - ECD_02165 0.22 +0.2
2,240,583 - ECD_02165 0.26 +0.3
2,240,609 - ECD_02165 0.28 -0.1
2,240,609 - ECD_02165 0.28 +1.0
2,240,615 - ECD_02165 0.29 +0.3

Or see this region's nucleotide sequence