Experiment: Bas31
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00332 and ECD_00333 are separated by 16 nucleotides ECD_00333 and ECD_00334 are separated by 119 nucleotides ECD_00334 and ECD_00335 are separated by 182 nucleotides
ECD_00332: ECD_00332 - diguanylate cyclase, cellulose regualtor, at 368,328 to 369,443
_00332
ECD_00333: ECD_00333 - pyrroline-5-carboxylate reductase, NAD(P)-binding, at 369,460 to 370,269
_00333
ECD_00334: ECD_00334 - UPF0178 family protein, at 370,389 to 370,847
_00334
ECD_00335: ECD_00335 - shikimate kinase II, at 371,030 to 371,554
_00335
Position (kb) 369
370
371 Strain fitness (log2 ratio) -2
-1
0
1 at 368.575 kb on + strand, within ECD_00332 at 368.613 kb on - strand, within ECD_00332 at 368.633 kb on - strand, within ECD_00332 at 368.714 kb on + strand, within ECD_00332 at 368.714 kb on + strand, within ECD_00332 at 368.867 kb on + strand, within ECD_00332 at 368.878 kb on - strand, within ECD_00332 at 368.982 kb on + strand, within ECD_00332 at 368.983 kb on - strand, within ECD_00332 at 368.983 kb on - strand, within ECD_00332 at 369.005 kb on + strand, within ECD_00332 at 369.005 kb on + strand, within ECD_00332 at 369.005 kb on + strand, within ECD_00332 at 369.006 kb on - strand, within ECD_00332 at 369.396 kb on + strand at 369.589 kb on - strand, within ECD_00333 at 369.589 kb on - strand, within ECD_00333 at 369.589 kb on - strand, within ECD_00333 at 369.589 kb on - strand, within ECD_00333 at 369.647 kb on - strand, within ECD_00333 at 369.729 kb on + strand, within ECD_00333 at 369.729 kb on + strand, within ECD_00333 at 369.729 kb on + strand, within ECD_00333 at 369.730 kb on - strand, within ECD_00333 at 369.730 kb on - strand, within ECD_00333 at 369.737 kb on + strand, within ECD_00333 at 369.793 kb on + strand, within ECD_00333 at 369.823 kb on - strand, within ECD_00333 at 370.006 kb on - strand, within ECD_00333 at 370.006 kb on - strand, within ECD_00333 at 370.166 kb on + strand, within ECD_00333 at 370.167 kb on - strand, within ECD_00333 at 370.167 kb on - strand, within ECD_00333 at 370.249 kb on - strand at 370.322 kb on + strand at 370.322 kb on + strand at 370.332 kb on + strand at 370.389 kb on - strand at 370.461 kb on - strand, within ECD_00334 at 370.483 kb on + strand, within ECD_00334 at 370.613 kb on + strand, within ECD_00334 at 370.615 kb on + strand, within ECD_00334 at 370.677 kb on + strand, within ECD_00334 at 370.722 kb on - strand, within ECD_00334 at 370.732 kb on + strand, within ECD_00334 at 370.733 kb on - strand, within ECD_00334 at 370.733 kb on - strand, within ECD_00334 at 370.767 kb on - strand, within ECD_00334 at 370.881 kb on - strand at 371.012 kb on + strand at 371.155 kb on + strand, within ECD_00335 at 371.257 kb on + strand, within ECD_00335
Per-strain Table
Position Strand Gene LocusTag Fraction Bas31 remove 368,575 + ECD_00332 0.22 +0.5 368,613 - ECD_00332 0.26 -0.5 368,633 - ECD_00332 0.27 -0.6 368,714 + ECD_00332 0.35 -0.6 368,714 + ECD_00332 0.35 -0.9 368,867 + ECD_00332 0.48 +0.1 368,878 - ECD_00332 0.49 -0.4 368,982 + ECD_00332 0.59 +0.0 368,983 - ECD_00332 0.59 -0.7 368,983 - ECD_00332 0.59 -0.6 369,005 + ECD_00332 0.61 +0.1 369,005 + ECD_00332 0.61 -0.1 369,005 + ECD_00332 0.61 +0.5 369,006 - ECD_00332 0.61 -0.4 369,396 + +1.0 369,589 - ECD_00333 0.16 -0.9 369,589 - ECD_00333 0.16 -1.9 369,589 - ECD_00333 0.16 -0.8 369,589 - ECD_00333 0.16 -2.0 369,647 - ECD_00333 0.23 -0.8 369,729 + ECD_00333 0.33 -1.0 369,729 + ECD_00333 0.33 -1.8 369,729 + ECD_00333 0.33 -0.7 369,730 - ECD_00333 0.33 -2.2 369,730 - ECD_00333 0.33 -2.0 369,737 + ECD_00333 0.34 -0.0 369,793 + ECD_00333 0.41 -1.2 369,823 - ECD_00333 0.45 -0.2 370,006 - ECD_00333 0.67 -1.3 370,006 - ECD_00333 0.67 -0.0 370,166 + ECD_00333 0.87 +0.5 370,167 - ECD_00333 0.87 -1.2 370,167 - ECD_00333 0.87 -1.4 370,249 - -1.3 370,322 + +1.4 370,322 + -0.0 370,332 + -0.8 370,389 - +0.3 370,461 - ECD_00334 0.16 +0.6 370,483 + ECD_00334 0.20 -1.0 370,613 + ECD_00334 0.49 +0.8 370,615 + ECD_00334 0.49 +0.4 370,677 + ECD_00334 0.63 +0.4 370,722 - ECD_00334 0.73 +0.9 370,732 + ECD_00334 0.75 +0.1 370,733 - ECD_00334 0.75 +0.1 370,733 - ECD_00334 0.75 -1.1 370,767 - ECD_00334 0.82 +1.3 370,881 - -1.2 371,012 + -0.7 371,155 + ECD_00335 0.24 -1.0 371,257 + ECD_00335 0.43 -0.6
Or see this region's nucleotide sequence