Strain Fitness in Escherichia coli BL21 around ECD_00288

Experiment: Bas31

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00287 and ECD_00288 are separated by 33 nucleotidesECD_00288 and ECD_00289 are separated by 39 nucleotides ECD_00287: ECD_00287 - 2-methylcitrate synthase, at 319,641 to 320,810 _00287 ECD_00288: ECD_00288 - 2-methylcitrate dehydratase, at 320,844 to 322,295 _00288 ECD_00289: ECD_00289 - propionate--CoA ligase, at 322,335 to 324,221 _00289 Position (kb) 320 321 322 323Strain fitness (log2 ratio) -2 -1 0 1 2at 319.876 kb on - strand, within ECD_00287at 320.021 kb on + strand, within ECD_00287at 320.021 kb on + strand, within ECD_00287at 320.086 kb on - strand, within ECD_00287at 320.098 kb on - strand, within ECD_00287at 320.214 kb on - strand, within ECD_00287at 320.214 kb on - strand, within ECD_00287at 320.230 kb on - strand, within ECD_00287at 320.294 kb on + strand, within ECD_00287at 320.294 kb on + strand, within ECD_00287at 320.294 kb on + strand, within ECD_00287at 320.298 kb on + strand, within ECD_00287at 320.298 kb on + strand, within ECD_00287at 320.299 kb on - strand, within ECD_00287at 320.443 kb on + strand, within ECD_00287at 320.444 kb on - strand, within ECD_00287at 320.444 kb on - strand, within ECD_00287at 320.472 kb on - strand, within ECD_00287at 320.550 kb on + strand, within ECD_00287at 320.550 kb on + strand, within ECD_00287at 320.551 kb on - strand, within ECD_00287at 320.760 kb on + strandat 320.761 kb on - strandat 320.829 kb on - strandat 320.933 kb on + strandat 321.113 kb on + strand, within ECD_00288at 321.113 kb on + strand, within ECD_00288at 321.364 kb on + strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.670 kb on - strand, within ECD_00288at 321.753 kb on + strand, within ECD_00288at 321.753 kb on + strand, within ECD_00288at 321.828 kb on - strand, within ECD_00288at 321.891 kb on + strand, within ECD_00288at 321.892 kb on - strand, within ECD_00288at 322.148 kb on + strand, within ECD_00288at 322.284 kb on + strandat 322.285 kb on - strandat 322.285 kb on - strandat 322.315 kb on - strandat 322.334 kb on + strandat 322.334 kb on + strandat 322.335 kb on - strandat 322.335 kb on - strandat 322.335 kb on - strandat 322.353 kb on + strandat 322.586 kb on + strand, within ECD_00289at 322.587 kb on - strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.674 kb on + strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.675 kb on - strand, within ECD_00289at 322.676 kb on + strand, within ECD_00289at 322.701 kb on - strand, within ECD_00289at 322.703 kb on + strand, within ECD_00289at 322.704 kb on - strand, within ECD_00289at 322.704 kb on - strand, within ECD_00289at 322.854 kb on + strand, within ECD_00289at 322.856 kb on + strand, within ECD_00289at 323.050 kb on - strand, within ECD_00289at 323.103 kb on + strand, within ECD_00289at 323.205 kb on + strand, within ECD_00289at 323.205 kb on + strand, within ECD_00289at 323.206 kb on - strand, within ECD_00289

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas31
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319,876 - ECD_00287 0.20 +0.8
320,021 + ECD_00287 0.32 +0.0
320,021 + ECD_00287 0.32 -0.1
320,086 - ECD_00287 0.38 +0.3
320,098 - ECD_00287 0.39 -0.2
320,214 - ECD_00287 0.49 +0.2
320,214 - ECD_00287 0.49 -0.8
320,230 - ECD_00287 0.50 +0.4
320,294 + ECD_00287 0.56 +0.8
320,294 + ECD_00287 0.56 +0.3
320,294 + ECD_00287 0.56 -0.9
320,298 + ECD_00287 0.56 +0.5
320,298 + ECD_00287 0.56 -0.4
320,299 - ECD_00287 0.56 -0.9
320,443 + ECD_00287 0.69 +0.1
320,444 - ECD_00287 0.69 -0.0
320,444 - ECD_00287 0.69 +0.3
320,472 - ECD_00287 0.71 +0.3
320,550 + ECD_00287 0.78 +1.1
320,550 + ECD_00287 0.78 -0.3
320,551 - ECD_00287 0.78 -0.0
320,760 + +0.5
320,761 - +0.0
320,829 - -0.3
320,933 + -0.2
321,113 + ECD_00288 0.19 -0.6
321,113 + ECD_00288 0.19 +1.1
321,364 + ECD_00288 0.36 -0.5
321,670 - ECD_00288 0.57 -1.3
321,670 - ECD_00288 0.57 -0.7
321,670 - ECD_00288 0.57 +0.4
321,753 + ECD_00288 0.63 -0.9
321,753 + ECD_00288 0.63 -0.6
321,828 - ECD_00288 0.68 +0.1
321,891 + ECD_00288 0.72 -0.1
321,892 - ECD_00288 0.72 -1.2
322,148 + ECD_00288 0.90 +0.7
322,284 + -2.3
322,285 - +0.1
322,285 - +0.2
322,315 - -2.0
322,334 + -0.9
322,334 + -0.3
322,335 - -1.0
322,335 - -0.0
322,335 - +0.1
322,353 + +0.1
322,586 + ECD_00289 0.13 -0.3
322,587 - ECD_00289 0.13 -0.7
322,674 + ECD_00289 0.18 -0.4
322,674 + ECD_00289 0.18 +0.2
322,674 + ECD_00289 0.18 -0.3
322,674 + ECD_00289 0.18 -0.3
322,674 + ECD_00289 0.18 +0.7
322,674 + ECD_00289 0.18 +0.1
322,674 + ECD_00289 0.18 +0.9
322,675 - ECD_00289 0.18 +1.0
322,675 - ECD_00289 0.18 +0.4
322,675 - ECD_00289 0.18 +0.9
322,675 - ECD_00289 0.18 +0.2
322,675 - ECD_00289 0.18 -0.4
322,675 - ECD_00289 0.18 +0.2
322,676 + ECD_00289 0.18 -0.5
322,701 - ECD_00289 0.19 -0.1
322,703 + ECD_00289 0.20 -0.4
322,704 - ECD_00289 0.20 -0.4
322,704 - ECD_00289 0.20 -1.3
322,854 + ECD_00289 0.28 -0.2
322,856 + ECD_00289 0.28 +0.5
323,050 - ECD_00289 0.38 +2.2
323,103 + ECD_00289 0.41 -0.3
323,205 + ECD_00289 0.46 +0.6
323,205 + ECD_00289 0.46 +0.0
323,206 - ECD_00289 0.46 +0.5

Or see this region's nucleotide sequence