Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21460

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21455 and ABIE41_RS21460 are separated by 7 nucleotidesABIE41_RS21460 and ABIE41_RS21465 overlap by 4 nucleotides ABIE41_RS21455: ABIE41_RS21455 - heme lyase CcmF/NrfE family subunit, at 4,411,809 to 4,413,794 _RS21455 ABIE41_RS21460: ABIE41_RS21460 - cytochrome c maturation protein CcmE, at 4,413,802 to 4,414,332 _RS21460 ABIE41_RS21465: ABIE41_RS21465 - c-type cytochrome biogenesis protein CcmI, at 4,414,329 to 4,415,429 _RS21465 Position (kb) 4413 4414 4415Strain fitness (log2 ratio) -2 -1 0 1at 4414.542 kb on - strand, within ABIE41_RS21465at 4414.542 kb on - strand, within ABIE41_RS21465at 4414.931 kb on + strand, within ABIE41_RS21465at 4414.931 kb on + strand, within ABIE41_RS21465at 4414.932 kb on - strand, within ABIE41_RS21465at 4414.933 kb on + strand, within ABIE41_RS21465at 4414.934 kb on - strand, within ABIE41_RS21465at 4414.934 kb on - strand, within ABIE41_RS21465at 4414.934 kb on - strand, within ABIE41_RS21465at 4414.934 kb on - strand, within ABIE41_RS21465at 4415.087 kb on - strand, within ABIE41_RS21465

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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4,414,542 - ABIE41_RS21465 0.19 -0.7
4,414,542 - ABIE41_RS21465 0.19 -0.9
4,414,931 + ABIE41_RS21465 0.55 -0.6
4,414,931 + ABIE41_RS21465 0.55 -2.5
4,414,932 - ABIE41_RS21465 0.55 -1.4
4,414,933 + ABIE41_RS21465 0.55 -1.1
4,414,934 - ABIE41_RS21465 0.55 +0.1
4,414,934 - ABIE41_RS21465 0.55 -0.2
4,414,934 - ABIE41_RS21465 0.55 -0.0
4,414,934 - ABIE41_RS21465 0.55 +0.7
4,415,087 - ABIE41_RS21465 0.69 -0.4

Or see this region's nucleotide sequence