Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17575

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17570 and ABIE41_RS17575 are separated by 438 nucleotidesABIE41_RS17575 and ABIE41_RS17580 are separated by 22 nucleotides ABIE41_RS17570: ABIE41_RS17570 - outer membrane protein assembly factor BamA, at 3,615,156 to 3,617,609 _RS17570 ABIE41_RS17575: ABIE41_RS17575 - RIP metalloprotease RseP, at 3,618,048 to 3,619,199 _RS17575 ABIE41_RS17580: ABIE41_RS17580 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,619,222 to 3,620,400 _RS17580 Position (kb) 3618 3619 3620Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3617.775 kb on - strandat 3617.912 kb on - strandat 3618.385 kb on + strand, within ABIE41_RS17575at 3618.390 kb on + strand, within ABIE41_RS17575at 3618.391 kb on + strand, within ABIE41_RS17575at 3618.391 kb on + strand, within ABIE41_RS17575at 3618.391 kb on + strand, within ABIE41_RS17575at 3618.391 kb on + strand, within ABIE41_RS17575at 3618.391 kb on + strand, within ABIE41_RS17575at 3618.392 kb on - strand, within ABIE41_RS17575at 3618.410 kb on - strand, within ABIE41_RS17575at 3618.455 kb on - strand, within ABIE41_RS17575at 3618.455 kb on - strand, within ABIE41_RS17575at 3618.776 kb on - strand, within ABIE41_RS17575at 3618.776 kb on - strand, within ABIE41_RS17575at 3618.964 kb on + strand, within ABIE41_RS17575at 3619.148 kb on + strandat 3619.148 kb on + strandat 3619.148 kb on + strandat 3619.149 kb on - strandat 3619.150 kb on + strandat 3619.150 kb on + strandat 3619.150 kb on + strandat 3619.150 kb on + strandat 3619.151 kb on - strandat 3619.151 kb on - strandat 3619.151 kb on - strandat 3619.151 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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3,617,775 - -1.0
3,617,912 - -0.2
3,618,385 + ABIE41_RS17575 0.29 -2.4
3,618,390 + ABIE41_RS17575 0.30 -2.5
3,618,391 + ABIE41_RS17575 0.30 -1.6
3,618,391 + ABIE41_RS17575 0.30 -1.6
3,618,391 + ABIE41_RS17575 0.30 -0.4
3,618,391 + ABIE41_RS17575 0.30 -2.5
3,618,391 + ABIE41_RS17575 0.30 -2.1
3,618,392 - ABIE41_RS17575 0.30 -1.8
3,618,410 - ABIE41_RS17575 0.31 -3.6
3,618,455 - ABIE41_RS17575 0.35 -1.0
3,618,455 - ABIE41_RS17575 0.35 -1.7
3,618,776 - ABIE41_RS17575 0.63 -1.4
3,618,776 - ABIE41_RS17575 0.63 -1.9
3,618,964 + ABIE41_RS17575 0.80 -1.9
3,619,148 + -1.9
3,619,148 + -1.8
3,619,148 + -0.2
3,619,149 - -1.7
3,619,150 + -1.7
3,619,150 + -3.9
3,619,150 + -1.9
3,619,150 + -3.0
3,619,151 - -1.4
3,619,151 - +1.0
3,619,151 - -0.4
3,619,151 - +0.6

Or see this region's nucleotide sequence