Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08535

Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08530 and ABIE41_RS08535 are separated by 332 nucleotidesABIE41_RS08535 and ABIE41_RS08540 overlap by 96 nucleotides ABIE41_RS08530: ABIE41_RS08530 - N-formylglutamate amidohydrolase, at 1,759,283 to 1,760,203 _RS08530 ABIE41_RS08535: ABIE41_RS08535 - histidinol-phosphatase, at 1,760,536 to 1,761,318 _RS08535 ABIE41_RS08540: ABIE41_RS08540 - alpha/beta hydrolase, at 1,761,223 to 1,762,290 _RS08540 Position (kb) 1760 1761 1762Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1759.580 kb on + strand, within ABIE41_RS08530at 1759.581 kb on - strand, within ABIE41_RS08530at 1759.581 kb on - strand, within ABIE41_RS08530at 1759.700 kb on + strand, within ABIE41_RS08530at 1759.700 kb on + strand, within ABIE41_RS08530at 1759.700 kb on + strand, within ABIE41_RS08530at 1759.700 kb on + strand, within ABIE41_RS08530at 1759.700 kb on + strand, within ABIE41_RS08530at 1759.700 kb on + strand, within ABIE41_RS08530at 1759.701 kb on - strand, within ABIE41_RS08530at 1759.701 kb on - strand, within ABIE41_RS08530at 1759.701 kb on - strand, within ABIE41_RS08530at 1759.701 kb on - strand, within ABIE41_RS08530at 1759.752 kb on - strand, within ABIE41_RS08530at 1759.774 kb on - strand, within ABIE41_RS08530at 1759.922 kb on + strand, within ABIE41_RS08530at 1759.923 kb on - strand, within ABIE41_RS08530at 1759.923 kb on - strand, within ABIE41_RS08530at 1759.988 kb on + strand, within ABIE41_RS08530at 1759.989 kb on - strand, within ABIE41_RS08530at 1759.989 kb on - strand, within ABIE41_RS08530at 1760.015 kb on + strand, within ABIE41_RS08530at 1760.015 kb on - strand, within ABIE41_RS08530at 1760.016 kb on - strand, within ABIE41_RS08530at 1760.072 kb on + strand, within ABIE41_RS08530at 1760.073 kb on - strand, within ABIE41_RS08530at 1760.201 kb on + strandat 1760.201 kb on + strandat 1760.202 kb on - strandat 1760.347 kb on + strandat 1760.347 kb on + strandat 1760.348 kb on - strandat 1760.773 kb on + strand, within ABIE41_RS08535at 1760.777 kb on - strand, within ABIE41_RS08535at 1760.878 kb on + strand, within ABIE41_RS08535at 1760.878 kb on + strand, within ABIE41_RS08535at 1760.941 kb on + strand, within ABIE41_RS08535at 1760.942 kb on - strand, within ABIE41_RS08535at 1761.055 kb on + strand, within ABIE41_RS08535at 1761.056 kb on - strand, within ABIE41_RS08535at 1761.056 kb on - strand, within ABIE41_RS08535at 1761.106 kb on + strand, within ABIE41_RS08535at 1761.107 kb on - strand, within ABIE41_RS08535at 1761.112 kb on + strand, within ABIE41_RS08535at 1761.112 kb on + strand, within ABIE41_RS08535at 1761.112 kb on + strand, within ABIE41_RS08535at 1761.113 kb on - strand, within ABIE41_RS08535at 1761.113 kb on - strand, within ABIE41_RS08535at 1761.169 kb on + strand, within ABIE41_RS08535at 1761.258 kb on + strandat 1761.360 kb on + strand, within ABIE41_RS08540at 1761.360 kb on + strand, within ABIE41_RS08540at 1761.360 kb on + strand, within ABIE41_RS08540at 1761.360 kb on + strand, within ABIE41_RS08540at 1761.360 kb on + strand, within ABIE41_RS08540at 1761.361 kb on - strand, within ABIE41_RS08540at 1761.361 kb on - strand, within ABIE41_RS08540at 1761.668 kb on + strand, within ABIE41_RS08540at 1761.669 kb on - strand, within ABIE41_RS08540at 1761.669 kb on - strand, within ABIE41_RS08540at 1761.669 kb on - strand, within ABIE41_RS08540at 1761.926 kb on + strand, within ABIE41_RS08540at 1761.926 kb on + strand, within ABIE41_RS08540at 1761.926 kb on + strand, within ABIE41_RS08540at 1761.927 kb on - strand, within ABIE41_RS08540at 1761.983 kb on + strand, within ABIE41_RS08540at 1761.984 kb on - strand, within ABIE41_RS08540at 1761.984 kb on - strand, within ABIE41_RS08540at 1762.256 kb on + strandat 1762.257 kb on - strandat 1762.257 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
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1,759,580 + ABIE41_RS08530 0.32 +2.9
1,759,581 - ABIE41_RS08530 0.32 +1.5
1,759,581 - ABIE41_RS08530 0.32 -0.3
1,759,700 + ABIE41_RS08530 0.45 +0.8
1,759,700 + ABIE41_RS08530 0.45 -0.3
1,759,700 + ABIE41_RS08530 0.45 +1.9
1,759,700 + ABIE41_RS08530 0.45 +0.9
1,759,700 + ABIE41_RS08530 0.45 +1.3
1,759,700 + ABIE41_RS08530 0.45 +0.4
1,759,701 - ABIE41_RS08530 0.45 +0.3
1,759,701 - ABIE41_RS08530 0.45 +0.0
1,759,701 - ABIE41_RS08530 0.45 -1.4
1,759,701 - ABIE41_RS08530 0.45 +0.1
1,759,752 - ABIE41_RS08530 0.51 +0.9
1,759,774 - ABIE41_RS08530 0.53 -0.1
1,759,922 + ABIE41_RS08530 0.69 +0.4
1,759,923 - ABIE41_RS08530 0.69 +0.3
1,759,923 - ABIE41_RS08530 0.69 +0.1
1,759,988 + ABIE41_RS08530 0.77 +0.7
1,759,989 - ABIE41_RS08530 0.77 +0.0
1,759,989 - ABIE41_RS08530 0.77 +0.0
1,760,015 + ABIE41_RS08530 0.79 -0.5
1,760,015 - ABIE41_RS08530 0.79 -0.0
1,760,016 - ABIE41_RS08530 0.80 +0.3
1,760,072 + ABIE41_RS08530 0.86 -2.5
1,760,073 - ABIE41_RS08530 0.86 +0.6
1,760,201 + +0.4
1,760,201 + -0.7
1,760,202 - +0.1
1,760,347 + +0.2
1,760,347 + +0.5
1,760,348 - +1.3
1,760,773 + ABIE41_RS08535 0.30 -0.1
1,760,777 - ABIE41_RS08535 0.31 +0.5
1,760,878 + ABIE41_RS08535 0.44 +0.7
1,760,878 + ABIE41_RS08535 0.44 +0.4
1,760,941 + ABIE41_RS08535 0.52 +1.1
1,760,942 - ABIE41_RS08535 0.52 +0.6
1,761,055 + ABIE41_RS08535 0.66 -0.0
1,761,056 - ABIE41_RS08535 0.66 +3.5
1,761,056 - ABIE41_RS08535 0.66 -0.0
1,761,106 + ABIE41_RS08535 0.73 +0.6
1,761,107 - ABIE41_RS08535 0.73 +0.7
1,761,112 + ABIE41_RS08535 0.74 +0.4
1,761,112 + ABIE41_RS08535 0.74 +1.0
1,761,112 + ABIE41_RS08535 0.74 +0.7
1,761,113 - ABIE41_RS08535 0.74 +0.1
1,761,113 - ABIE41_RS08535 0.74 +0.0
1,761,169 + ABIE41_RS08535 0.81 +2.1
1,761,258 + +0.7
1,761,360 + ABIE41_RS08540 0.13 +1.3
1,761,360 + ABIE41_RS08540 0.13 +0.6
1,761,360 + ABIE41_RS08540 0.13 +0.5
1,761,360 + ABIE41_RS08540 0.13 +0.8
1,761,360 + ABIE41_RS08540 0.13 +0.6
1,761,361 - ABIE41_RS08540 0.13 +1.7
1,761,361 - ABIE41_RS08540 0.13 +0.4
1,761,668 + ABIE41_RS08540 0.42 +0.8
1,761,669 - ABIE41_RS08540 0.42 +1.1
1,761,669 - ABIE41_RS08540 0.42 -2.1
1,761,669 - ABIE41_RS08540 0.42 +0.0
1,761,926 + ABIE41_RS08540 0.66 +1.3
1,761,926 + ABIE41_RS08540 0.66 +0.1
1,761,926 + ABIE41_RS08540 0.66 -0.2
1,761,927 - ABIE41_RS08540 0.66 +1.4
1,761,983 + ABIE41_RS08540 0.71 -1.0
1,761,984 - ABIE41_RS08540 0.71 +0.5
1,761,984 - ABIE41_RS08540 0.71 -0.3
1,762,256 + -0.5
1,762,257 - +0.2
1,762,257 - +0.4

Or see this region's nucleotide sequence