Experiment: R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS02670 and ABIE41_RS02675 are separated by 129 nucleotides ABIE41_RS02675 and ABIE41_RS02680 are separated by 100 nucleotides ABIE41_RS02680 and ABIE41_RS02685 are separated by 7 nucleotides ABIE41_RS02685 and ABIE41_RS02690 are separated by 109 nucleotides
ABIE41_RS02670: ABIE41_RS02670 - DUF2470 domain-containing protein, at 541,066 to 541,875
_RS02670
ABIE41_RS02675: ABIE41_RS02675 - response regulator transcription factor, at 542,005 to 542,706
_RS02675
ABIE41_RS02680: ABIE41_RS02680 - sensor histidine kinase, at 542,807 to 544,606
_RS02680
ABIE41_RS02685: ABIE41_RS02685 - HPr kinase/phosphatase C-terminal domain-containing protein, at 544,614 to 545,057
_RS02685
ABIE41_RS02690: ABIE41_RS02690 - PTS sugar transporter subunit IIA, at 545,167 to 545,568
_RS02690
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 541.891 kb on - strand at 541.901 kb on + strand at 541.902 kb on - strand at 541.902 kb on - strand at 541.902 kb on - strand at 541.905 kb on - strand at 541.995 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 542.004 kb on + strand at 545.096 kb on + strand at 545.096 kb on + strand at 545.096 kb on + strand at 545.096 kb on + strand at 545.097 kb on - strand at 545.161 kb on + strand at 545.530 kb on + strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.531 kb on - strand at 545.566 kb on + strand at 545.566 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with 6-Pentyl-2H-pyran-2-one 0.3133 mM remove 541,891 - -1.0 541,901 + -1.1 541,902 - -0.2 541,902 - +0.1 541,902 - +0.2 541,905 - -0.4 541,995 + -0.3 542,004 + -0.7 542,004 + -1.2 542,004 + -1.1 542,004 + +0.1 542,004 + +0.1 542,004 + +0.7 545,096 + -1.6 545,096 + -0.6 545,096 + -0.1 545,096 + +2.4 545,097 - +0.2 545,161 + -1.0 545,530 + -3.3 545,531 - -0.4 545,531 - -1.0 545,531 - -0.8 545,531 - -0.8 545,531 - -3.0 545,531 - +0.5 545,531 - -0.0 545,531 - -1.7 545,531 - -0.4 545,566 + +0.1 545,566 + +0.4
Or see this region's nucleotide sequence