Strain Fitness in Escherichia coli BL21 around ECD_04166

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_04164 and ECD_04165 are separated by 189 nucleotidesECD_04165 and ECD_04166 are separated by 16 nucleotidesECD_04166 and ECD_04167 are separated by 11 nucleotidesECD_04167 and ECD_04168 are separated by 130 nucleotides ECD_04164: ECD_04164 - IS1 protein InsA, at 4,434,144 to 4,434,419 _04164 ECD_04165: ECD_04165 - putative DNA-binding transcriptional regulator, at 4,434,609 to 4,435,391 _04165 ECD_04166: ECD_04166 - putative epimerase, at 4,435,408 to 4,436,040 _04166 ECD_04167: ECD_04167 - putative phosphotransferase enzyme IIA component, at 4,436,052 to 4,436,483 _04167 ECD_04168: ECD_04168 - putative nucleoside triphosphatase, at 4,436,614 to 4,437,420 _04168 Position (kb) 4435 4436 4437Strain fitness (log2 ratio) -2 -1 0 1 2at 4434.495 kb on + strandat 4434.495 kb on + strandat 4434.495 kb on + strandat 4434.607 kb on + strandat 4434.607 kb on + strandat 4434.608 kb on - strandat 4434.615 kb on + strandat 4434.627 kb on + strandat 4434.668 kb on + strandat 4434.669 kb on - strandat 4434.669 kb on - strandat 4434.705 kb on - strand, within ECD_04165at 4434.707 kb on + strand, within ECD_04165at 4434.708 kb on - strand, within ECD_04165at 4434.708 kb on - strand, within ECD_04165at 4434.714 kb on + strand, within ECD_04165at 4434.714 kb on + strand, within ECD_04165at 4434.715 kb on - strand, within ECD_04165at 4434.715 kb on - strand, within ECD_04165at 4434.723 kb on + strand, within ECD_04165at 4434.773 kb on + strand, within ECD_04165at 4434.795 kb on - strand, within ECD_04165at 4434.873 kb on - strand, within ECD_04165at 4434.967 kb on + strand, within ECD_04165at 4434.967 kb on + strand, within ECD_04165at 4435.134 kb on + strand, within ECD_04165at 4435.134 kb on + strand, within ECD_04165at 4435.135 kb on - strand, within ECD_04165at 4435.348 kb on + strandat 4435.410 kb on - strandat 4435.429 kb on + strandat 4435.429 kb on + strandat 4435.430 kb on - strandat 4435.430 kb on - strandat 4435.430 kb on - strandat 4435.479 kb on + strand, within ECD_04166at 4435.479 kb on + strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.480 kb on - strand, within ECD_04166at 4435.524 kb on + strand, within ECD_04166at 4435.602 kb on + strand, within ECD_04166at 4435.702 kb on - strand, within ECD_04166at 4435.705 kb on + strand, within ECD_04166at 4435.760 kb on + strand, within ECD_04166at 4435.921 kb on - strand, within ECD_04166at 4436.040 kb on + strandat 4436.159 kb on + strand, within ECD_04167at 4436.245 kb on - strand, within ECD_04167at 4436.256 kb on - strand, within ECD_04167at 4436.267 kb on + strand, within ECD_04167at 4436.326 kb on + strand, within ECD_04167at 4436.343 kb on - strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.371 kb on + strand, within ECD_04167at 4436.372 kb on - strand, within ECD_04167at 4436.393 kb on - strand, within ECD_04167at 4436.447 kb on + strandat 4436.448 kb on - strandat 4436.448 kb on - strandat 4436.461 kb on - strandat 4436.468 kb on + strandat 4436.468 kb on + strandat 4436.468 kb on + strandat 4436.469 kb on - strandat 4436.572 kb on + strandat 4436.573 kb on - strandat 4436.573 kb on - strandat 4436.605 kb on - strandat 4436.623 kb on + strandat 4436.623 kb on + strandat 4436.624 kb on - strandat 4436.625 kb on + strandat 4436.625 kb on + strandat 4436.625 kb on + strandat 4436.625 kb on + strandat 4436.625 kb on + strandat 4436.625 kb on + strandat 4436.626 kb on - strandat 4436.626 kb on - strandat 4436.626 kb on - strandat 4436.626 kb on - strandat 4436.626 kb on - strandat 4436.644 kb on - strandat 4436.697 kb on + strand, within ECD_04168at 4436.883 kb on + strand, within ECD_04168at 4436.884 kb on - strand, within ECD_04168at 4436.899 kb on - strand, within ECD_04168at 4436.904 kb on + strand, within ECD_04168at 4436.904 kb on + strand, within ECD_04168at 4436.904 kb on + strand, within ECD_04168at 4437.018 kb on + strand, within ECD_04168

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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4,434,495 + -1.5
4,434,495 + +0.6
4,434,495 + -1.1
4,434,607 + +0.7
4,434,607 + +0.6
4,434,608 - -0.0
4,434,615 + +0.1
4,434,627 + +0.7
4,434,668 + +0.0
4,434,669 - -0.4
4,434,669 - -0.1
4,434,705 - ECD_04165 0.12 +0.3
4,434,707 + ECD_04165 0.13 -0.1
4,434,708 - ECD_04165 0.13 +0.1
4,434,708 - ECD_04165 0.13 +0.5
4,434,714 + ECD_04165 0.13 -0.8
4,434,714 + ECD_04165 0.13 -0.5
4,434,715 - ECD_04165 0.14 +0.0
4,434,715 - ECD_04165 0.14 -0.1
4,434,723 + ECD_04165 0.15 +0.0
4,434,773 + ECD_04165 0.21 +0.3
4,434,795 - ECD_04165 0.24 -0.4
4,434,873 - ECD_04165 0.34 +1.5
4,434,967 + ECD_04165 0.46 +0.6
4,434,967 + ECD_04165 0.46 +0.2
4,435,134 + ECD_04165 0.67 +0.3
4,435,134 + ECD_04165 0.67 +0.6
4,435,135 - ECD_04165 0.67 +0.5
4,435,348 + +0.7
4,435,410 - +1.1
4,435,429 + +0.5
4,435,429 + +0.4
4,435,430 - -1.2
4,435,430 - +1.0
4,435,430 - +0.2
4,435,479 + ECD_04166 0.11 +1.2
4,435,479 + ECD_04166 0.11 +0.9
4,435,480 - ECD_04166 0.11 +0.5
4,435,480 - ECD_04166 0.11 +0.6
4,435,480 - ECD_04166 0.11 +1.0
4,435,480 - ECD_04166 0.11 +0.8
4,435,524 + ECD_04166 0.18 +0.4
4,435,602 + ECD_04166 0.31 -0.2
4,435,702 - ECD_04166 0.46 +0.5
4,435,705 + ECD_04166 0.47 -0.1
4,435,760 + ECD_04166 0.56 -0.4
4,435,921 - ECD_04166 0.81 -0.9
4,436,040 + +0.7
4,436,159 + ECD_04167 0.25 +0.0
4,436,245 - ECD_04167 0.45 +0.1
4,436,256 - ECD_04167 0.47 +0.8
4,436,267 + ECD_04167 0.50 -0.0
4,436,326 + ECD_04167 0.63 -1.7
4,436,343 - ECD_04167 0.67 +0.5
4,436,371 + ECD_04167 0.74 +0.3
4,436,371 + ECD_04167 0.74 +1.2
4,436,371 + ECD_04167 0.74 -1.0
4,436,371 + ECD_04167 0.74 -0.4
4,436,371 + ECD_04167 0.74 +1.2
4,436,372 - ECD_04167 0.74 +0.3
4,436,393 - ECD_04167 0.79 +0.0
4,436,447 + +1.9
4,436,448 - -1.1
4,436,448 - +0.3
4,436,461 - +0.5
4,436,468 + +0.3
4,436,468 + +0.3
4,436,468 + +0.1
4,436,469 - -0.5
4,436,572 + -0.7
4,436,573 - +0.6
4,436,573 - -0.2
4,436,605 - -0.1
4,436,623 + +0.6
4,436,623 + +2.3
4,436,624 - -1.0
4,436,625 + -0.1
4,436,625 + +0.8
4,436,625 + -0.3
4,436,625 + +0.8
4,436,625 + -0.3
4,436,625 + +0.7
4,436,626 - +0.9
4,436,626 - -0.5
4,436,626 - -2.2
4,436,626 - -0.7
4,436,626 - -0.7
4,436,644 - -0.4
4,436,697 + ECD_04168 0.10 +0.2
4,436,883 + ECD_04168 0.33 +0.3
4,436,884 - ECD_04168 0.33 +0.1
4,436,899 - ECD_04168 0.35 +1.3
4,436,904 + ECD_04168 0.36 -2.1
4,436,904 + ECD_04168 0.36 +0.4
4,436,904 + ECD_04168 0.36 -0.3
4,437,018 + ECD_04168 0.50 +0.3

Or see this region's nucleotide sequence